Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B04
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    48   1e-06
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   3.5  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    27   4.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   8.1  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   8.1  

>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
 Frame = +2

Query: 398 YQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKE-------GIT------WGK 538
           Y  S+  ++KG+ RRFW  +  HRGT + PG V TLI  +E         T      WG 
Sbjct: 26  YDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGM 85

Query: 539 AFLVAAENSVAL-PYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALPENKH 715
           AF + A+ +  +  YL  RE       +  V  H    +P      ++ L+Y+   ++  
Sbjct: 86  AFRIPAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVL----ENCLVYVGTSKSPQ 141

Query: 716 WLGSAPLPDIAKQILECRG 772
           +  S  L  +AK I   RG
Sbjct: 142 FQPSDDLTQMAKIISTRRG 160



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 352 WVFGYGSLCWNP----GXRIPAILDWLCKRF 432
           WVFGYGSL W+P       IP  +    +RF
Sbjct: 11  WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRF 41


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 542 FLVAAENSVALPYLTKRECKLGGYKTCVVNFHPTPFLP 655
           F+VAA +  A  Y  K E     Y+  +  ++P PF P
Sbjct: 724 FIVAAASLYAFNYGLKSETDPAIYERVLAGYNPPPFAP 761


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 644 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQIL 760
           P + AT  + +    ++A PEN+ +    P P    QIL
Sbjct: 263 PIIAATPLNSQTQASWVAQPENQAYANLIPSPPTTSQIL 301


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 539  AFLVAAENSVA--LPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALPENK 712
            AFLV  +      L Y  +   KLGG+K+ V+N             KK  L  +     +
Sbjct: 1150 AFLVTTDTKAQGFLAYALQEFLKLGGFKSAVIN-------------KKKGLTVV----TE 1192

Query: 713  HWLGSAPLPDIAKQIL 760
            HW+    LPD++K++L
Sbjct: 1193 HWMS---LPDLSKRVL 1205


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 299 ETKRAVPNQKQNLPRNLSGYLVMVPYAGIQGFEYQQS 409
           ET R+V ++  N P  L+  L    Y GI  +E   S
Sbjct: 828 ETSRSVSDRPANFPEELNDTLFEQKYPGIVDYEEPNS 864


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +2

Query: 344 NLSGYLVMVPYAGIQGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEG 523
           +L G   M PY  + G  Y  S T Y+   ++  + G    RGT  K    AT+ E  E 
Sbjct: 199 SLEGLWFMAPYIELYGSTYIVSNTNYI---TKIDYSGRGYFRGT--KNSFKATIFEKNED 253

Query: 524 ITWGKAFLVAAENSVALPYL 583
             +    +   E+ + +P L
Sbjct: 254 PDYIVEGVWTGESKLTIPSL 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,596,269
Number of Sequences: 5004
Number of extensions: 79542
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)