Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_B04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769... 83 4e-16
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307... 35 0.075
12_02_0144 + 14364255-14364881,14364898-14364957 32 0.70
01_06_0054 - 26027072-26028463 30 2.1
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136... 29 3.7
06_03_0630 + 22926652-22928133 29 4.9
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 29 4.9
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 28 8.6
>02_03_0153 -
15776359-15776516,15776742-15776821,15776912-15776983,
15777070-15777110,15777201-15777257,15777344-15777400,
15778441-15778517,15778652-15778760
Length = 216
Score = 82.6 bits (195), Expect = 4e-16
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Frame = +2
Query: 389 GFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEGITWGKAFLVAA---E 559
GF++ + + G+VKG+ R F HRGT + P R TL D+E I WG A+ V +
Sbjct: 16 GFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDEEAICWGIAYCVKGGLKK 75
Query: 560 NSVALPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALPE---NKHWLGSA 730
A+ YL +REC+ + V+F+ + + L++++ P+ NK++LG A
Sbjct: 76 EQEAMKYLERRECEYD--QKISVDFYKEG--DSLKPAVTGVLVFVSTPDPVGNKYYLGPA 131
Query: 731 PLPDIAKQILECRGP 775
PL D+A+QI GP
Sbjct: 132 PLEDMARQIATANGP 146
Score = 35.1 bits (77), Expect = 0.075
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 352 WVFGYGSLCWNPG 390
WVFGYGSL WNPG
Sbjct: 4 WVFGYGSLIWNPG 16
>04_04_0043 -
22330282-22330410,22330484-22330568,22330602-22330724,
22330839-22330879,22331081-22331137,22331530-22331583,
22331646-22331650,22332392-22332500
Length = 200
Score = 35.1 bits (77), Expect = 0.075
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 352 WVFGYGSLCWNPG 390
WVFGYGSL WNPG
Sbjct: 4 WVFGYGSLVWNPG 16
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 530 WGKAFLVAAENS--VALPYLTKRECKLGGYKTCVVNFHPTPFLPATRADKKDALLYIALP 703
WG A+ ++ E AL +L RE + + +P PA K+ ++Y+A
Sbjct: 39 WGVAYKISTEQDKQTALEHLEVREKQYDEKIYLDLYMDSSPKTPAV----KNVMVYLATT 94
Query: 704 E---NKHWLGSAPLPDIAK 751
N+++LG APL ++AK
Sbjct: 95 NKQSNQNYLGPAPLEEMAK 113
>12_02_0144 + 14364255-14364881,14364898-14364957
Length = 228
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 346 PFWVFGYGSLCWNPGXRIPAILDWLCKRFLKEILAREHHSSWNRR*AGSRRHSNRG 513
P W + LCWN G R+P+I D L + E +R ++ R A H G
Sbjct: 60 PHWGCEFFRLCWNEGMRLPSIEDCLGCSNIAESSSRSYNMGNRLRQARVPVHQRLG 115
>01_06_0054 - 26027072-26028463
Length = 463
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 638 DG-SLQRRSCSHLICILFW*DKAVLRCFLRPPKTLYPKLFLPCPL 507
DG S +RRSCS + L ++ CF+R P L F P PL
Sbjct: 208 DGTSRRRRSCSRVPAALIVFALGLVLCFVRDPSILQDLRFGPAPL 252
>12_02_0390 -
18510095-18510148,18510318-18512450,18513018-18513681,
18514089-18514202,18514835-18514979,18515274-18515331
Length = 1055
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 NLKARDMNINEKKFFSMYAR*NHLTR-LFIILLSHFLFEFKCYYFN 255
NLKA + IN K+F+M + + R L +I+L+ +L E+K + F+
Sbjct: 762 NLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFS 807
>06_03_0630 + 22926652-22928133
Length = 493
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 644 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQILECR 769
P +P R+D+ + + I PE+KH+L A L D+ + + E +
Sbjct: 185 PGMPFLRSDELPSAVSIVSPEHKHYLLLAMLRDLFEDLDELK 226
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 615 RPAL*TSIQHPFYRPLEQIKRMPCCT*PFQRINIGLDRR 731
RP ++ HP+++ L +++R P C P ++ +RR
Sbjct: 347 RPTAEEALAHPYFKGLAKVEREPSCQ-PITKMEFEFERR 384
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 674 KDALLYIALPENKHWLGSAPLPDIAKQILEC 766
K++ + +++PE + +G APL D Q+L C
Sbjct: 961 KESHVVLSIPEYNYAIGFAPLMDYNSQLLPC 991
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,284,454
Number of Sequences: 37544
Number of extensions: 493609
Number of successful extensions: 1186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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