Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical ...    75   5e-14
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   4.4  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   4.4  

>AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical
           protein F22F7.7 protein.
          Length = 232

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
 Frame = +2

Query: 389 GFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEGITWGKAFLVAAENSV 568
           GF +  S   Y  G++RR +QGNT HRG E  PGRVATLIE+    T G  F V  ++++
Sbjct: 63  GFTFSTSRKAYAIGWARRMYQGNTYHRGDEKLPGRVATLIEETNSYTNGVVFRVDGKSAI 122

Query: 569 --ALPYLTKRECKLGGYKTCVVNFHPTPFLPAT--RADKKDALLYIALPENKHWLGSAPL 736
             A+ YL +REC   GY   +V   P     A   R     AL  +A  +N+ +LG   L
Sbjct: 123 ATAVKYLEQRECD-NGYAFRMV---PVQIRSAAHRRPTVVMALTCVADQQNELYLGPDDL 178

Query: 737 PDIAKQILECRG 772
             +A++I+  +G
Sbjct: 179 IKMAREIVTAKG 190



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 352 WVFGYGSLCWNPG 390
           W+FGYGSL WNPG
Sbjct: 51  WIFGYGSLIWNPG 63


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 739 WQRRRSKPM--FILWKGYVQQGILFIC 665
           W   R+KP+  F  +  YV QGI+F C
Sbjct: 157 WTEERNKPLVNFFFYLNYVVQGIVFFC 183


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 430 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRSTALS 582
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  S  +S
Sbjct: 621 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQIS 672


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 430 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRSTALS 582
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  S  +S
Sbjct: 621 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQIS 672


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 430 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRSTALS 582
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  S  +S
Sbjct: 608 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQIS 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,547,615
Number of Sequences: 27780
Number of extensions: 436732
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)