Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B02
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    67   4e-12

>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 24/44 (54%), Positives = 38/44 (86%)
 Frame = +1

Query: 322 ALLAEKMDHHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMD 453
           AL A++++HHPEW NVYNK+ +TL++HD  GL+++D+K+A F+D
Sbjct: 47  ALRAQQLNHHPEWTNVYNKVDITLTTHDTKGLTEKDLKLAEFID 90



 Score = 34.7 bits (76), Expect = 0.018
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 183 LNQXERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMT 314
           +N   R   L    ++ W +Q     + K F+FKNF EA+GFM+
Sbjct: 1   MNTSARLLALVSKSKNNWILQQGDTKLFKSFRFKNFIEAWGFMS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,531
Number of Sequences: 5004
Number of extensions: 54188
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)