Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B02
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 643 IMSKFNVFVKANRYLLYNL 699
           ++ KFNV  K N  + YNL
Sbjct: 75  VLEKFNVMDKKNGKIRYNL 93


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 617 DYFNEEKFNVICIMKT 570
           D  NE K+  +C++KT
Sbjct: 597 DLSNERKYEDVCVLKT 612


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 723 FDILVSFV*IIQ*VTISLNKYIKLGHNLCISRFSMR 616
           FD++ S   I+    ISL++YI +   L   R+  R
Sbjct: 104 FDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTR 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,153
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)