Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_B01
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 797 PPPPXXGGGXXXXXXXXPPPPP 862
           PPPP    G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 24.6 bits (51), Expect(2) = 1.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 548 PPXPXXXXKKKPPPPP 595
           PP P      +PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 22.2 bits (45), Expect(2) = 1.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 455 PPXXXXPPPPP 487
           PP    PPPPP
Sbjct: 5   PPGNPPPPPPP 15


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = +2

Query: 473 PPPPPFXXXXXXPXXGXXXXXXXXXPPXPXXXXKKKPPPPPXXXXGXTXXPXHXXXXXXX 652
           PPPPP       P  G         PP         PPPP     G    P         
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPP---------PPPPRSNAAGSIPLPPQGRSAPPP 363

Query: 653 PPP 661
           PPP
Sbjct: 364 PPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/60 (26%), Positives = 17/60 (28%)
 Frame = +2

Query: 416 VXXKXXFLXKKXXPPXXXXPPPPPFXXXXXXPXXGXXXXXXXXXPPXPXXXXKKKPPPPP 595
           V  +   L K   PP      P P       P            PP P       PPPPP
Sbjct: 721 VEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 791 PXPPPPXXGGGXXXXXXXXPPPP 859
           P PPPP  G          PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 796 PPPPXXXGGXXXXXXXXXPPPPP 864
           PPPP    G         PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -2

Query: 861 GGGGGXXXXXXXXPPPXXGG-GGXGXF 784
           GGG G        PPP  GG GG G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGF 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,800
Number of Sequences: 5004
Number of extensions: 23384
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)