Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A24
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    37   0.003
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   1.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    28   2.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   8.1  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 670 ERFIELQDLLHGFRNPHVMDIKMGTRTF 753
           ER+I ++DL  G + P V+D+KMGTR +
Sbjct: 713 ERYIVIEDLTSGMKRPCVLDVKMGTRQY 740


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 679 IELQDLLHGFRNPHVMDIKMGTRTFLEDEVSNAHARAD 792
           I L+++L+    P VMDIK+G + + +D       R D
Sbjct: 83  IILENILYQMETPCVMDIKLGKQLWADDAPLEKRKRLD 120


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 574 HNPERDAYEALAACPHMRGVIPRYYREL 657
           +NP+  AYEA+  C  M G   ++Y+EL
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 628 GVIPRYYRELEYDGERFIELQDLLHGFRNPH--VMDIKMGTRTFLEDEVSNAH 780
           G + R  R L  + E+F +LQD L  F+N    + +++    + L +  S AH
Sbjct: 147 GFVSRVRRALLSNPEQFFKLQDSLRKFKNSECSLSELQTIVTSLLAEHPSLAH 199


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 KILAVAVPSK-EEDRWHTKDGTLFKRWR 333
           K++   +P+    D W T  G+LF RW+
Sbjct: 211 KLVQSGIPNNLRADIWETCSGSLFPRWK 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,843
Number of Sequences: 5004
Number of extensions: 62716
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)