Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A21
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    71   2e-13
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.7  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    27   4.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   6.2  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   8.2  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   8.2  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 31/72 (43%), Positives = 50/72 (69%)
 Frame = +2

Query: 323 QKKFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGF 502
           +KK+LVP D+T+ QF+ +IR RI++ P +A+++ I+     + +L M+  YE +  EDGF
Sbjct: 46  KKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAAL-MSTIYEEHKSEDGF 104

Query: 503 LYITYASQEVFG 538
           LYITY+ +  FG
Sbjct: 105 LYITYSGENTFG 116



 Score = 33.1 bits (72), Expect = 0.054
 Identities = 20/98 (20%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
 Frame = +2

Query: 539 YQDDMQ-EKSNREVEAIRHRFPNKVPLYVTRYVRDREVPVLGRTKFLVPRNSQCRSFC-T 712
           ++DD   EK   E + IR ++P+++P+ +   V   ++  + + K+LVP +     F   
Sbjct: 5   FKDDFSFEKRKTESQRIREKYPDRIPV-ICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYV 63

Query: 713 L*XQDEXPRFQALYLLVNEKVXAXQSMTMAQAYXQFRS 826
           +  + +    +A+++ ++E +    +  M+  Y + +S
Sbjct: 64  IRKRIKLSPEKAIFIFIDE-ILPPTAALMSTIYEEHKS 100



 Score = 32.3 bits (70), Expect = 0.095
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 225 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKNF 335
           RK E   I+ K+P +IP+I E+  K  ++  +DKK +
Sbjct: 14  RKTESQRIREKYPDRIPVICEKVDKS-DIAAIDKKKY 49



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 610 PAVRDQIRKRS*GASIRENKVLSAQELTMSQFLYIIRXR 726
           P + +++ K S  A+I + K L   +LT+ QF+Y+IR R
Sbjct: 30  PVICEKVDK-SDIAAIDKKKYLVPSDLTVGQFVYVIRKR 67


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 800 PXSYFGS--PKLFRSQASTMPGIAEXHLXLIMYRNCDIVSSWALRTLFSLILAP 645
           P  YF    P+++ S  ST P +A   +  +   +CDIV+S+ L+ L  ++ AP
Sbjct: 244 PQKYFSCILPQVW-SLFSTQPRLASQLIIAVTNTHCDIVTSFLLKKL-QILEAP 295


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +3

Query: 225 RKEEVMAIKS-KFPTK---IPLIVERYHKERNLPTLDKKNF*SRKISPCLSFWLSSETGS 392
           RK+    I+S KFP     I LIVE++ K R   T + K+F   K++    F  SS+T  
Sbjct: 92  RKKPNFPIRSIKFPASMETINLIVEKFEKIRASATEETKDF--IKLNEVNEF-PSSDTSL 148

Query: 393 ESN 401
           ESN
Sbjct: 149 ESN 151


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 IKREICQHWTKKIFSPGRYHHVSVFGYHQKQD 390
           +++++  +W K I  P  +H+  +F Y Q  D
Sbjct: 633 VEKQLALNWKKDIERPSFHHNQQLFNYCQLTD 664


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 431 NRSMLSMSLTMAQAYENYGDEDGFLYITYAS-QEVFGYQDDMQ 556
           N++  +  +++++ Y +  +E    Y  Y + QEVFGYQD+ +
Sbjct: 2   NQTEAAPVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYE 44


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 597 KRCLMASTSRFDFSCISSW 541
           KRC++A +   D SCI +W
Sbjct: 6   KRCVLAYSGGLDTSCILAW 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,628
Number of Sequences: 5004
Number of extensions: 66066
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)