Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A21
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 73 2e-13
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 73 4e-13
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 66 5e-11
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 48 1e-05
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 46 3e-05
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 31 1.2
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 3.7
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 4.9
06_02_0011 - 10569471-10572245 29 4.9
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 28 8.6
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 28 8.6
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +2
Query: 323 QKKFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGF 502
+KK+LVP D+T+ QF+ ++R RI++ P +A+++ + N + SL M+ YE DEDGF
Sbjct: 211 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASL-MSAIYEENKDEDGF 269
Query: 503 LYITYASQEVFG 538
LY+TY+ + FG
Sbjct: 270 LYMTYSGENTFG 281
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 225 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKNF 335
R+ E I+ K+ +IP+IVE+ K ++P +DKK +
Sbjct: 179 RQAESARIREKYSDRIPVIVEKADK-TDVPEIDKKKY 214
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 72.5 bits (170), Expect = 4e-13
Identities = 29/72 (40%), Positives = 50/72 (69%)
Frame = +2
Query: 323 QKKFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGF 502
+KK+LVP D+T+ QF+ ++R RI++ P +A+++ + N ++ + M+ YE DEDGF
Sbjct: 47 KKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGF 105
Query: 503 LYITYASQEVFG 538
LY+TY+ + FG
Sbjct: 106 LYMTYSGENTFG 117
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 225 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKNF 335
R+ E I+ K+ +IP+IVE+ + ++P +DKK +
Sbjct: 15 RQAEANRIREKYSDRIPVIVEKAERS-DIPDIDKKKY 50
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 65.7 bits (153), Expect = 5e-11
Identities = 26/70 (37%), Positives = 47/70 (67%)
Frame = +2
Query: 329 KFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLY 508
++LVP D+T+ QF+ ++R RI++ +A+++ + N ++ + M+ YE DEDGFLY
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFLY 1942
Query: 509 ITYASQEVFG 538
+TY+ + FG
Sbjct: 1943 MTYSGENTFG 1952
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 225 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKK 329
R+ E I+ K+P +IP+IVE+ + ++P +DKK
Sbjct: 1808 RQAEANRIREKYPDRIPVIVEKAERS-DIPDIDKK 1841
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 335 LVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYI 511
++ E + S + + ++ + P AL++ +NN + L M YE+Y DE DGFLY+
Sbjct: 206 VIVEKFSRSNLPEMEKRKLHLSPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYL 264
Query: 512 TYASQEVFG 538
Y+S++ FG
Sbjct: 265 CYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 380 RNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYITYASQEVFG 538
+ ++ + P AL++ +NN + L M YE+Y DE DGFLY+ Y+S++ FG
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYLCYSSEKTFG 87
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 108 LSKMHLREGIGWSSYNNIDKKYSLPDKFKADIKKVCKIIRKEEVMAIKSKF 260
L K+H+ +SYN +D K+SL K ++K + K E +KSKF
Sbjct: 485 LVKIHVSLSQLQASYNELDAKHSLLSDEKNSVQKALD-VEKVEACKLKSKF 534
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 786 WXAXTFSFTSKYNAWNR---GXSSXSYNVQKLRHCEFLGTKNFVLPNTGTSRSLTY 628
W + F++T + A N+ G S N +++ + G FVL TG +SLTY
Sbjct: 1778 WSSTHFAWTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTY 1833
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 353 TMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLT--MAQAYENYGDEDGFLYITYASQ 526
++S ++ I VK + LY + R L +S+T +AQ+YE E Q
Sbjct: 354 SVSMICAMLLEFIEVKGSFQLYYY-HGRDFLVLSMTAQLAQSYEGLKQEHDKKIGLLRKQ 412
Query: 527 EVFGYQDDMQEKSNREVEAI 586
EV G EK+ E+E++
Sbjct: 413 EVKGVDYLKMEKNKMEIESL 432
>06_02_0011 - 10569471-10572245
Length = 924
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 256 LLLIAITSSFRIILQTFLMSALNLSGKEYFLSI 158
L++IA+ +++Q FL+S+ N + + FLSI
Sbjct: 705 LIIIAVAVLISVVIQVFLLSSTNSNTLQTFLSI 737
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 844 YAGSHRGXELXVRLXHXHTLXRXNFFVHKQVQCLESRXFILXL*CTETATL*VPGH 677
Y SH G + R H H L N F ++Q L + + CT ++ P +
Sbjct: 701 YLCSHAGIQGTSRPTHYHVLYDENHFTADELQTLTNNLCYIYARCTHAVSVVPPAY 756
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +2
Query: 458 TMAQAYENYGDEDGFLYITYASQEVFGYQDDMQEKSNREVEAIRHRFPNKVPLYVTRYVR 637
T+A AY+N GD D + Y+ S DD + RE++ R P + R VR
Sbjct: 1332 TLATAYKNLGD-DVWRYVGKLSDAQRSMLDDRFKWKAREMDKRREGRPGDARAALRRSVR 1390
Query: 638 DREVPVLGRTKFLVPRNSQCRSF 706
+ + ++ V R+ +F
Sbjct: 1391 ENGSDIAEQSGEAVSRSMAGENF 1413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,345,986
Number of Sequences: 37544
Number of extensions: 404268
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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