Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A21
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +2

Query: 464 AQAYENYGDEDGFLYITYASQEVFGYQDDMQEKSNREVEAIRHRFPNKVPLYVTRY 631
           A+A+ +  D    ++      + F Y     EK    +++  + + N VP+ V R+
Sbjct: 18  AKAHYSLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVDRW 73


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 NSPPKYH*SLSDIIKREICQHWTKKIFSPGRYHHVSVFGYH 378
           ++ P Y  +  + IK+E+  +  K  ++P     V + G+H
Sbjct: 84  STEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 124


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 NSPPKYH*SLSDIIKREICQHWTKKIFSPGRYHHVSVFGYH 378
           ++ P Y  +  + IK+E+  +  K  ++P     V + G+H
Sbjct: 100 STEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 140


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 256 NSPPKYH*SLSDIIKREICQHWTKKIFSPGRYHHVSVFGYH 378
           ++ P Y  +  + IK+E+  +  K  ++P     V + G+H
Sbjct: 157 STEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,300
Number of Sequences: 438
Number of extensions: 4971
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)