Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A20
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +3

Query: 786 NPPPPPXXFFXXXXXPPXFFXXXXPPPPPP 875
           NPPPPP         PP F     PPPPPP
Sbjct: 8   NPPPPPP--------PPGFEPPSQPPPPPP 29



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +1

Query: 790 PPPPPXXFFXXXXPPPXFFXXXXPPPPP 873
           PPPPP        PPP F     PPPPP
Sbjct: 9   PPPPP--------PPPGFEPPSQPPPPP 28



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 788 PPPPPXXFFXXXXXPPPLFXXXX--PPPPPP 874
           PPPPP         PPP F      PPPPPP
Sbjct: 9   PPPPP---------PPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/50 (34%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
 Frame = +3

Query: 735 PPPPPXKKKXXXXXXXKNPPPPPXXFFXXXXXPP---XFFXXXXPPPPPP 875
           PPP             K PPPPP         PP          PPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 788 PPPPPXXFFXXXXXPPPLFXXXXPPPPPP 874
           PPPPP         P P      PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = +2

Query: 773 GEXKKPPPPPXXFFXXXXXPPPLF---XXXXPPPPPP 874
           G    PPPPP         PPPL        PP PPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 788 PPPPPXXFFXXXXXPPPLFXXXXPPPPPP 874
           PPP P         PPP      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
 Frame = +2

Query: 782 KKPPPPPXXFF------XXXXXPPPLFXXXXPPPPPP 874
           K PPPPP               PPP      PPPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
 Frame = +2

Query: 788 PPPPPXXFFXXXXXPPP---LFXXXXPPPPPP 874
           P PPP         PPP   +     PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +2

Query: 773 GEXKKPPPPPXXFFXXXXXPPPLFXXXXPPPPPP 874
           G    PPPPP         PPP      PPPPPP
Sbjct: 759 GGPPPPPPPPG---VAGAGPPP------PPPPPP 783



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 735 PPPPPXKKKXXXXXXXKNPPPPP 803
           PPPPP             PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 787  TPPPPPXXFFXXXXPPPXFFXXXXPPPPP 873
            TPPPPP         PP        PPPP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = +3

Query: 738  PPPPXKKKXXXXXXXKNPPPPPXXFFXXXXXPPXFFXXXXPPPPP 872
            PP   +           PPPPP         PP        PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,242
Number of Sequences: 5004
Number of extensions: 22839
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)