Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A15
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   141   1e-34
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   141   1e-34
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    48   1e-06
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   4.8  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   6.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   8.3  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  141 bits (341), Expect = 1e-34
 Identities = 62/69 (89%), Positives = 66/69 (95%)
 Frame = +2

Query: 233 KXHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGAT 412
           K HLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGAT
Sbjct: 85  KTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGAT 144

Query: 413 HSSRFIPLK 439
           HSSRFIPLK
Sbjct: 145 HSSRFIPLK 153


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  141 bits (341), Expect = 1e-34
 Identities = 62/69 (89%), Positives = 66/69 (95%)
 Frame = +2

Query: 233 KXHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGAT 412
           K HLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGAT
Sbjct: 86  KTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGAT 145

Query: 413 HSSRFIPLK 439
           HSSRFIPLK
Sbjct: 146 HSSRFIPLK 154


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = +2

Query: 233 KXHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 376
           K  +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 51  KTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 432 GMNLELCVAPIPGLPCFTGLYVTENS 355
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 423 LELCVAPIPGLPCFTGLYVTE 361
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +2

Query: 266 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 415
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,228
Number of Sequences: 5004
Number of extensions: 30067
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)