Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.010
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    34   0.024
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    29   0.89 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.6  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    28   2.1  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    27   3.6  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.6  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 260 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 439
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 440 RVQ 448
             +
Sbjct: 106 ETK 108


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +2

Query: 665 ENVLPRIKKQGYNAIQIMAIKEH-------AYYASFGYQVTSFFAASSRYGTPCELKQLI 823
           EN L  I+  G+NAI I  I ++       A YA  GY  T + + +  +GT  +L  LI
Sbjct: 67  ENKLDYIEDMGFNAIWISPIDKNIEGDIDGAGYAYHGYWNTDYESLNEHFGTEDDLVSLI 126

Query: 824 XRAHE 838
             AH+
Sbjct: 127 TAAHK 131


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 572 KVDKPRSLRIYECHVGIATSEGKVGSYNE 658
           ++    S+ +YE H  IA  +G VG YN+
Sbjct: 196 RIQNEFSVLVYEIHARIALEKGDVGEYNQ 224


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = +2

Query: 644 GSYNEFRENVLPRIKKQGYNAIQIMAIKEHAYY-----ASF-GYQVTSFFAASSRYGTPC 805
           G++N  R N L  I+  G++AI I  I E+        +S+ GY  T+ +  +  +GT  
Sbjct: 66  GTWNGIR-NHLDYIQGMGFDAIWISPIFENVEGNDIDGSSYHGYWTTNLYELNHHFGTKE 124

Query: 806 ELKQLIXRAHE 838
           E  +LI   H+
Sbjct: 125 EFMELIQELHK 135


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 754 PKRSVICMFLYGHDLYSIVTLFLDSGQDVLAEL-VVRAH 641
           PK+ ++ M  YGH   S+   +LD G DV   + + RAH
Sbjct: 123 PKK-IVAMDPYGHLTPSVFKKYLDEGYDVRPTIAITRAH 160


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 752 GYQVTSFFAASSRYGTPCELKQLIXRAHE 838
           GY V+ +    SRYGT  +L +L+   HE
Sbjct: 70  GYDVSDYKQIDSRYGTLEDLDRLMKALHE 98


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 464 NLYRISPWASYVKPHEGFTYQHFIYKPEQPY 556
           +LY + P+A +V P+ G+ YQ+ +Y  E  Y
Sbjct: 26  HLY-VWPFALFVYPYIGYVYQNKLYSEEVRY 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,496,011
Number of Sequences: 5004
Number of extensions: 75676
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)