Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A14
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 235 3e-62
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 191 7e-49
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 123 2e-28
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 47 8e-10
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 31 1.6
02_04_0329 + 22081052-22082434 28 8.7
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 235 bits (576), Expect = 3e-62
Identities = 116/248 (46%), Positives = 158/248 (63%), Gaps = 6/248 (2%)
Frame = +2
Query: 113 FESAGXLKPYASAISRSXACYKXIWXRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWREW 292
F+ L Y + + Y+ + I+ ++GGLE F++GY+ +G + +G VT+REW
Sbjct: 148 FQMDSMLNGYKYHLEYRYSLYRRLRSDIDQYEGGLETFSRGYEKFGFNHSAEG-VTYREW 206
Query: 293 APGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLY 472
APGAHS L G+FN W+ + +K E+G WEI +P N DGS + H SRV++ +
Sbjct: 207 APGAHSAALVGDFNNWNPNADRMSKNEFGVWEIFLPNNADGSSPIPHGSRVKVRMETPSG 266
Query: 473 ---RISPWASYVKPHEG-FTYQHFIYKP--EQPYKFKHPKVDKPRSLRIYECHVGIATSE 634
I W Y G Y Y P E+ Y FKHP+ +P+SLRIYE HVG++++E
Sbjct: 267 IKDSIPAWIKYSVQAAGEIPYNGIYYDPPEEEKYIFKHPQPKRPKSLRIYETHVGMSSTE 326
Query: 635 GKVGSYNEFRENVLPRIKKQGYNAIQIMAIKEHAYYASFGYQVTSFFAASSRYGTPCELK 814
K+ +Y FR+ VLPRIKK GYNA+QIMAI+EHAYY SFGY VT+FFA SSR+GTP +LK
Sbjct: 327 PKINTYANFRDEVLPRIKKLGYNAVQIMAIQEHAYYGSFGYHVTNFFAPSSRFGTPEDLK 386
Query: 815 QLIXRAHE 838
LI +AHE
Sbjct: 387 SLIDKAHE 394
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 191 bits (465), Expect = 7e-49
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 9/223 (4%)
Frame = +2
Query: 194 IESWDGGLEAFTKGYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKE 373
IE +GGLE F+KGY +G DG+ +REWAP A L GEFN W+ H K +
Sbjct: 41 IEKHEGGLEEFSKGYLKFGIN-TVDGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK 99
Query: 374 YGKWEIQIPANPDGSCALKHDSRVQIIVNDN----LYRISPWASYVK---PHEGFTYQHF 532
+G W I+I ++ +G A+ H+S+V+ + RI W Y G Y
Sbjct: 100 FGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGV 158
Query: 533 IYKPE--QPYKFKHPKVDKPRSLRIYECHVGIATSEGKVGSYNEFRENVLPRIKKQGYNA 706
+ P + Y FKHP+ KP + RIYE HVG++ E +V +Y EF +NVLPRI+ YN
Sbjct: 159 HWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANNYNT 218
Query: 707 IQIMAIKEHAYYASFGYQVTSFFAASSRYGTPCELKQLIXRAH 835
+Q+MAI EH+YYASFGY VT+FFA SSR GTP +LK L+ +AH
Sbjct: 219 VQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLVDKAH 261
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 123 bits (297), Expect = 2e-28
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Frame = +2
Query: 173 YKXIWXRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKS 352
YK + I+ +GGL+AF++GY+ G + +G +T+REWAPGA S L G+FN W+ +
Sbjct: 183 YKRMRAAIDQHEGGLDAFSRGYEKLGFTRSAEG-ITYREWAPGAQSAALVGDFNNWNPNA 241
Query: 353 HPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDN---LYRISPWASYVKPHEG-FT 520
+ EYG WEI +P N DGS A+ H SRV+I ++ I W + G
Sbjct: 242 DTMTRNEYGVWEISLPNNADGSPAIPHGSRVKIRMDTPSGVKDSIPAWIKFAVQAPGEIP 301
Query: 521 YQHFIYKP--EQPYKFKHPKVDKPRSLRIYECHVGIAT 628
Y Y P E+ Y F+HP+ +P SLRIYE H+G+++
Sbjct: 302 YNGIYYDPPEEEKYVFQHPQPKRPNSLRIYESHIGMSS 339
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 47.2 bits (107), Expect(2) = 8e-10
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +2
Query: 644 GSYNEFRENVLPRIKKQGYNAIQIMAIKEHAYYASFGYQV 763
G N R VLP IK GYNAIQ++ I EH Y+S GY++
Sbjct: 420 GDLNGRRSKVLPHIKDAGYNAIQLIGIVEHKDYSSVGYKI 459
Score = 34.3 bits (75), Expect(2) = 8e-10
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +2
Query: 758 QVTSFFAASSRYGTPCELKQLIXRAH 835
+VT++F+ SSR+G+P + K+L+ AH
Sbjct: 491 EVTNYFSVSSRFGSPDDFKKLVDEAH 516
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 299 GAHS-LHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYR 475
G H L +R F W SK+ F + G +++ P P + H+ +I+N N Y+
Sbjct: 437 GVHQKLCIRAPFGNWQSKNEKFVAVK-GLPKVRCPFRP-----VYHE----MIINGNSYK 486
Query: 476 ISPWASYVKPHEGFTYQHF 532
+ A +++ H G T + +
Sbjct: 487 VLKVAGWMRVHPGRTLEDY 505
>02_04_0329 + 22081052-22082434
Length = 460
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 371 EYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYRISPWAS 493
E WE DG A + +++ I+VN+ LY + P +S
Sbjct: 322 ELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPSSS 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,202,340
Number of Sequences: 37544
Number of extensions: 508975
Number of successful extensions: 1101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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