Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A12
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   2.0  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   3.5  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    27   4.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   4.7  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   6.1  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   8.1  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   8.1  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   8.1  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +3

Query: 354 YGSSREICLVGLSNYKTT------DAAQLLSLRT--SQGETVQHS 464
           YG +R +C +G SNY T+      D A ++++ T  S G T  HS
Sbjct: 119 YGLTRGLCQIGSSNYSTSANSSNFDNANVINVTTSVSSGSTSTHS 163


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 191 PENEYRFPDGCTNPQYAIGTSVLHSMLTFSFSVANIVSTP 72
           P+ +YR+P+   NP+  +  S+   M +    ++N  + P
Sbjct: 104 PQTDYRYPNTSANPKMGLEESMDIDMPSIDLDISNAAAFP 143


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 678 RSWYHDSVHSDNRINRISRPGRDASFWAARRDRRPSRXTSWNPYRATRRGEAMLMFPKSE 857
           RSW    VH  + + ++S+P +D+   A +R +  S   S +     R+   +  FP++E
Sbjct: 11  RSWIEQFVH--DFVEQLSKPTKDSVNVALKRRKHNSWNGSLDSKANERQKVKVFSFPRNE 68

Query: 858 S 860
           +
Sbjct: 69  T 69


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 755 KTRVSSRARNPINAIITMHTIVIPAAAANDMV 660
           KT++SS+A+ PIN +    T     AA N+ V
Sbjct: 6   KTKLSSKAKEPINVVKYNRTGKYVLAAGNERV 37


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 693 DSVHSDNRINRISRPGRDASFWAARRDRRPSRXTSWN 803
           D  H   R +R  RPGR  S    RR RRPS     N
Sbjct: 193 DRDHRSRRRSRSRRPGRSRS---RRRSRRPSPSAEHN 226


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 1   TXXPXPLPTIXEPLKIL---I*TWKPD-GVETIF 90
           T  P P P +  P KIL     +WKPD G   +F
Sbjct: 448 TMPPTPYPALINPCKILPDYFPSWKPDAGTNAMF 481


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -2

Query: 830 LSSPSGPVGVPTRGPARASVSACCPKTRVSSRARNPINAIITMHTIVIPAAAANDMV*IP 651
           L+SP  P+ +P    A  + ++ CP   V    R+ IN + T ++++  +     +V  P
Sbjct: 179 LTSPPPPINLPLSYSATGAATSNCPPKYV----RSTINCVPTTNSLLKKSKIPFALVIRP 234

Query: 650 FT 645
           +T
Sbjct: 235 YT 236


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 165 WVHESTIRHRHIRLAFYVNIFIFSRKYCLDTV 70
           WVH   I H H +    V +F+FS+K C + V
Sbjct: 538 WVH--LIGHLHKQNLLPVIVFVFSKKRCEEYV 567


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 409 TPLSYCRFEPPKGRPFNIAED 471
           TP SY   +PP+GRP  +  D
Sbjct: 79  TPFSYPINDPPEGRPVRVYAD 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,824
Number of Sequences: 5004
Number of extensions: 65619
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)