Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A12
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 32 0.53
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 31 0.92
02_05_0447 + 29096853-29097033,29097812-29098146,29098651-290987... 30 2.8
11_01_0738 - 6218730-6220173,6221969-6223056 29 3.7
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 4.9
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 28 8.6
05_04_0049 + 17497255-17497908 28 8.6
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 8.6
>04_03_0535 -
16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 32.3 bits (70), Expect = 0.53
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Frame = +1
Query: 403 RLTPLSYCRFEPPK-GRPFNIAEDVTPDNAILGRFYFPTNMSL-----DRGDCAVTINNV 564
R+ P P + GR + E PDN I F NM L D C +TINN
Sbjct: 127 RIVPSICANLSPDQLGRVKGVVECSNPDNDIRR---FDANMRLFPPIIDSEKCPLTINNT 183
Query: 565 K----YDDYGTWTCGAGLDDGNE 621
Y Y W CG + GN+
Sbjct: 184 LLQSCYLRYTEWACGVAVYTGNQ 206
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 788 PARASVSACCPKTRVSSRARNPINAIITMHTIVIPAAAANDMV*IPFTFT 639
P ++ CC ++S A++P NAI + V A N V +P FT
Sbjct: 123 PYNMQIANCCKGGVLNSWAQDPANAIASFQVSVGQAGTTNKTVRVPRNFT 172
>02_05_0447 +
29096853-29097033,29097812-29098146,29098651-29098782,
29098870-29099142,29099295-29099477
Length = 367
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = -2
Query: 830 LSSPSGPVGVPTRGPARASVSACCPKTRVSSRARNPINAIITMHTIVIPAAAANDMV*IP 651
LSSP P P PAR SV+A P AR + A + + + ++A D IP
Sbjct: 12 LSSPPAPGARPQPRPARVSVAAAAP------AARRGVVAAAAVSSPAVSSSAGKDAKQIP 65
Query: 650 FTFTFI 633
F I
Sbjct: 66 KDFLHI 71
>11_01_0738 - 6218730-6220173,6221969-6223056
Length = 843
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 250 GEWRCHSGGHETGVEIIKTIELRVVNEVTALWKNVTVLHAKSVSLVCLTTKRLTP 414
G WR GH G ++ I +R N T + N T A +V L + L+P
Sbjct: 715 GLWRDEGDGHSAGNPVLYDINMRRYN--TFFYSNSTSFMASITVIVLLLQRMLSP 767
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 809 VGVPTRGPARASVSACCPKTRVSSRARNPINAIITMHTIVIPAAAAND 666
V V T GPA +S SA S NP + + M+TI P + D
Sbjct: 165 VSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGID 212
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 714 DYHYAHYRDTSCGCERHGVNSFYFYIYSISVFVSIVESCTARPRAVIVV 568
DYHY + + G ER + S VFV ++++ R R +++V
Sbjct: 196 DYHYTRFANYLTGEERDEIFSLVSLQPGNPVFVVVLQTAHVRRRNILIV 244
>05_04_0049 + 17497255-17497908
Length = 217
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 702 HSDNRINRISRPGRDASFWAARRDRRPSRXTSWNPYRATRRGE 830
H+DN + ++ G A + R RPS SW P RGE
Sbjct: 132 HADNFVVVVAAVGHRAETGSGERPSRPSPPLSWTPPHG-ERGE 173
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -2
Query: 830 LSSPSGPVGVPTRGPARASVSACCPKTRVSSRARNPINAIITMHTIVIPAAA 675
L S PVG T AR V SSR NPI I I P +
Sbjct: 426 LGSTDNPVGYITASDARLGVKPAPVMAAFSSRGPNPITPQILKPDITAPGVS 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,903,216
Number of Sequences: 37544
Number of extensions: 453064
Number of successful extensions: 1261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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