Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A12
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   8.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 493  LGRFYFPTNMSLDRGDCAVTINNVKYDD 576
            L  F F T   LD  D  + INNV Y+D
Sbjct: 1413 LSDFGFSTEDILDTADEDLLINNVFYED 1440


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 190 GTTLSAGHCFKNITVTPED 246
           GT   A H F+  + TPED
Sbjct: 265 GTNTDARHLFRTASSTPED 283


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 678 RSWYHDSVHSDNRINRISRPGRDASFWAARRDRR 779
           R+  HD  H+ +R +R  R  RD +    ++DR+
Sbjct: 218 RNRTHDFQHTSSRYSRERRCSRDRNREYRKKDRQ 251


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 657 NSFYFYIYSISVFVSIVESCTARPRAVIVVFHIV 556
           N F   +Y  ++ V  V SCT+   + IV+F +V
Sbjct: 305 NKFNNNVYKDALIVCTVNSCTSM-LSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 657 NSFYFYIYSISVFVSIVESCTARPRAVIVVFHIV 556
           N F   +Y  ++ V  V SCT+   + IV+F +V
Sbjct: 358 NKFNNNVYKDALIVCTVNSCTSM-LSGIVIFSVV 390


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 678 RSWYHDSVHSDNRINRISRPGRDASFWAARRDRR 779
           RS  HD  H+ +R +R     RD +     +DRR
Sbjct: 218 RSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRR 251


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 64  KPDGVETIFATENENVNIECK 126
           K   V ++ ++EN+N + ECK
Sbjct: 255 KKMNVASLRSSENQNTSAECK 275


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 64  KPDGVETIFATENENVNIECK 126
           K   V ++ ++EN+N + ECK
Sbjct: 131 KKMNVASLRSSENQNTSAECK 151


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 64  KPDGVETIFATENENVNIECK 126
           K   V ++ ++EN+N + ECK
Sbjct: 5   KKMNVASLRSSENQNTSAECK 25


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 523 SLDRGDCAVTINNVKYDDYGTWTCGAGLDDG 615
           +L++G C   I  V  D       GAG +DG
Sbjct: 452 NLEKGRCTGKIVTVGSDGNANIEIGAGEEDG 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,109
Number of Sequences: 438
Number of extensions: 4902
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)