Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A11
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.0
05_01_0142 - 940421-940701,941262-941574 31 1.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.4
03_06_0471 + 34169562-34169892,34170121-34170347 29 5.4
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 5.4
02_05_0925 - 32768815-32769654 29 5.4
02_04_0400 - 22608519-22608844,22609044-22609122 29 5.4
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 5.4
10_08_1008 - 22222051-22222377,22222479-22222640,22223179-222233... 29 7.1
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 7.1
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 9.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.4
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.4
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQG 598
P PPRG G P P P G PG PP G G P G
Sbjct: 1186 PPPPRGHGGVGGPPTPPGAPAPPMPPGV---PGGPPPPPGGRGLPAPPG 1231
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 524 PRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P+G+ PPG PP G PP PP
Sbjct: 37 PQGYPPPPGAYPPPPGAYPPPPGAYPPP 64
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 5.4
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPR----GFXXPPGXXXPPGGXXGXPPXQGXPPXK-- 613
P PP G P P P P+ G PP PP PP G PP
Sbjct: 9 PHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQP 68
Query: 614 --NFXARAPKRXXXP 652
NF P++ P
Sbjct: 69 QFNFGPGPPQQQQPP 83
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARAPKRXXXP 652
P P +G+ PG PGG PP Q P A+ P P
Sbjct: 26 PGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPSGYPP 74
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 5.4
Identities = 25/91 (27%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Frame = +2
Query: 407 SGPGGRXXXFFXXXXPAPPRGXGXXXLG-PXXXXPXXXPXPRGFXXPPGXXXPPGGXXGX 583
+G GG P PP+ P P P P G PP PP
Sbjct: 259 NGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPP---PPPPPLANG 315
Query: 584 PPXQGXPPXKNFXARAPKRXXXPKXXPLGGF 676
PP PP A A P P+ GF
Sbjct: 316 PPRSIPPPPMTGGAMANFTPGAPPRPPMQGF 346
>02_05_0925 - 32768815-32769654
Length = 279
Score = 29.1 bits (62), Expect = 5.4
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +3
Query: 453 PPPPGXXXFXFWXPLXXPPX*XRXPGVXGXPXGXXXPQGGXWGXPP 590
PPPP + W P PG P Q G W PP
Sbjct: 160 PPPPPPAHYPMWTSAA--PGAFAGPGSMAQPINGSPVQAGLWSVPP 203
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 29.1 bits (62), Expect = 5.4
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -1
Query: 606 GGXPXXGGXPXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAGXXXXKNXX 427
GG GG GG GG G G G G GG G N
Sbjct: 41 GGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGG 100
Query: 426 XRPPGP 409
PPGP
Sbjct: 101 YYPPGP 106
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Frame = -3
Query: 628 PXPKIFXGGX----PLXGGXPXXPPWGXXXPXGXPKTP-------GXRXXXGGXXXGXQX 482
P P + GG P G P PP+ P G P G R GG G
Sbjct: 338 PPPSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPP 397
Query: 481 XXXXXPGGGG 452
GGGG
Sbjct: 398 PYHGGGGGGG 407
>10_08_1008 -
22222051-22222377,22222479-22222640,22223179-22223310,
22224556-22224608,22224713-22225256
Length = 405
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +2
Query: 542 PPGXXXPPGGXXGXPPXQGXPPXKNFXARAPKRXXXPKXXPL 667
P PP PP Q PP F +AP P P+
Sbjct: 16 PAAAAPPPAAAPAPPPSQPPPPPLPFAQQAPPPAANPAAAPM 57
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +2
Query: 560 PPGGXXGXPPXQGXPPXKNFXARAPKRXXXPKXXPLGGFSQ 682
PP P QG P + A P+ + P GG+SQ
Sbjct: 588 PPTSAASSYPVQGSAPQSGYGAPPPQTGYGTQPQPQGGYSQ 628
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P P P G PP PGG PP G P
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGPPPPPPRPGSLP 647
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXK 613
P PP P P P P G G PP G P +G PP K
Sbjct: 350 PPPPPPAAPAAPRPPGPGPGPPPPP-GAAGRGGGGPPPPALPGGPRARGPPPFK 402
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/68 (26%), Positives = 23/68 (33%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARA 631
P+ P+ + P P P PP PP PP +G PP A+
Sbjct: 297 PSRPQSIAAAAVASPAPPPPPPPKPAAAAPPP--PPPPKAAPPPPPPKGPPPPP--PAKG 352
Query: 632 PKRXXXPK 655
P PK
Sbjct: 353 PPPPPPPK 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,881,615
Number of Sequences: 37544
Number of extensions: 250555
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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