Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A11
(945 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 41 0.001
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 41 0.001
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 41 0.001
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.056
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.056
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.056
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 35 0.097
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 35 0.097
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.22
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.22
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 33 0.39
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.52
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 32 0.69
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 31 0.91
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 1.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 1.6
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 30 2.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.8
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 29 3.7
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 4.8
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 29 4.8
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 4.8
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 29 4.8
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 4.8
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 29 4.8
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 4.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 4.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 4.8
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 4.8
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 28 8.5
Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 8.5
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 8.5
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 28 8.5
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 8.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.5
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.5
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 8.5
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 8.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/74 (36%), Positives = 27/74 (36%)
Frame = +2
Query: 413 PGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPX 592
PGG P PP G L P P P P G PP PPGG G PP
Sbjct: 732 PGGLPPITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 593 QGXPPXKNFXARAP 634
PP F AP
Sbjct: 787 --PPPPGMFAPMAP 798
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PP G L P P P P G G PP G PP G PP
Sbjct: 713 PPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPP---GXXXPPGGXXGXPPXQGXPPXKNFX 622
P PP G L P P P P G PP G PP G PP PP F
Sbjct: 726 PPPPPPPGG--LPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 623 ARAP 634
P
Sbjct: 782 GGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/74 (36%), Positives = 27/74 (36%)
Frame = +2
Query: 413 PGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPX 592
PGG P PP G L P P P P G PP PPGG G PP
Sbjct: 732 PGGLPPITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 593 QGXPPXKNFXARAP 634
PP F AP
Sbjct: 787 --PPPPGMFAPMAP 798
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PP G L P P P P G G PP G PP G PP
Sbjct: 713 PPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPP---GXXXPPGGXXGXPPXQGXPPXKNFX 622
P PP G L P P P P G PP G PP G PP PP F
Sbjct: 726 PPPPPPPGG--LPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 781
Query: 623 ARAP 634
P
Sbjct: 782 GGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/74 (36%), Positives = 27/74 (36%)
Frame = +2
Query: 413 PGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPX 592
PGG P PP G L P P P P G PP PPGG G PP
Sbjct: 315 PGGLPPITGGPPPPPPPGG-----LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Query: 593 QGXPPXKNFXARAP 634
PP F AP
Sbjct: 370 --PPPPGMFAPMAP 381
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PP G L P P P P G G PP G PP G PP
Sbjct: 296 PPPPPG-----LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 342
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPP---GXXXPPGGXXGXPPXQGXPPXKNFX 622
P PP G L P P P P G PP G PP G PP PP F
Sbjct: 309 PPPPPPPGG--LPPITGGPPPPPPPGGL--PPISGGPPPPPPPPGGCPPPPPPPPPGGFK 364
Query: 623 ARAP 634
P
Sbjct: 365 GGPP 368
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQG---XPPXKNFX 622
P PP G P P P PRG PP PP G PP G PP
Sbjct: 281 PPPPAGGSPPP--PRAGSPPPPPPPRG--SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336
Query: 623 ARAPKRXXXPKXXPLG 670
+AP+R P G
Sbjct: 337 RQAPERSPPTGSPPTG 352
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +2
Query: 491 PXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARAPKRXXXPKXXPLG 670
P P P P+G G PP PP G PP + P P P G
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPP-----PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 671 G 673
G
Sbjct: 287 G 287
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQG---XPPXKNFX 622
P PP G P P P PRG PP PP G PP G PP
Sbjct: 302 PPPPAGGSPPP--PRAGSPPPPPPPRG--SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357
Query: 623 ARAPKRXXXPKXXPLG 670
+AP+R P G
Sbjct: 358 RQAPERSPPTGSPPTG 373
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +2
Query: 491 PXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARAPKRXXXPKXXPLG 670
P P P P+G G PP PP G PP + P P P G
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPP-----PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 671 G 673
G
Sbjct: 308 G 308
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQG---XPPXKNFX 622
P PP G P P P PRG PP PP G PP G PP
Sbjct: 287 PPPPAGGSPPP--PRAGSPPPPPPPRG--SPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342
Query: 623 ARAPKRXXXPKXXPLG 670
+AP+R P G
Sbjct: 343 RQAPERSPPTGSPPTG 358
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = +2
Query: 491 PXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARAPKRXXXPKXXPLG 670
P P P P+G G PP PP G PP + P P P G
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPP-----PPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 671 G 673
G
Sbjct: 293 G 293
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.097
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -1
Query: 588 GGXPXXPPGGXXXP---GGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAG 451
GG P PPGG P GG P G G G G P +GG G
Sbjct: 161 GGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPG 209
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXX---PPG--GXXGXPPXQGXP 604
P P G G GP P G PPG PPG G G PP QG P
Sbjct: 154 PPPLMGGGGDPRGPPGGM-GGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGP 208
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 606 GGXPXXGGXPXXPPGGXXXPGGXXKPRGXG 517
GG P GG PPG PGG P G G
Sbjct: 190 GGPPGHGGMGGPPPG-QGGPGGPGGPGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 34.7 bits (76), Expect = 0.097
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -1
Query: 588 GGXPXXPPGGXXXP---GGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAG 451
GG P PPGG P GG P G G G G P +GG G
Sbjct: 441 GGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPG 489
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXX---PPG--GXXGXPPXQGXP 604
P P G G GP P G PPG PPG G G PP QG P
Sbjct: 434 PPPLMGGGGDPRGPPGGM-GGPPGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGP 488
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 606 GGXPXXGGXPXXPPGGXXXPGGXXKPRGXG 517
GG P GG PPG PGG P G G
Sbjct: 470 GGPPGHGGMGGPPPG-QGGPGGPGGPGGPG 498
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = +3
Query: 453 PPPPGXXXFXFWXPLXXPPX*XRXPGVXGXPXGXXXPQGGXWGXPPXRGXPP 608
PPPP W P PP R PG G P P +G P G PP
Sbjct: 288 PPPPSSG---MWPPPPPPPP-GRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 335
Score = 31.5 bits (68), Expect = 0.91
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 640 PFXGPXPKIFXGGXPLXGGXPXXPPWGXXXPXGXPKTPGXRXXXGG 503
P P P G P GG P PP G P G P P R G
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P P P PP PPG G P G PP
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.22
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = +3
Query: 453 PPPPGXXXFXFWXPLXXPPX*XRXPGVXGXPXGXXXPQGGXWGXPPXRGXPP 608
PPPP W P PP R PG G P P +G P G PP
Sbjct: 298 PPPPSSG---MWPPPPPPPP-GRTPGPPGMPGMPPPPPPSRFGPPGMGGMPP 345
Score = 31.5 bits (68), Expect = 0.91
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 640 PFXGPXPKIFXGGXPLXGGXPXXPPWGXXXPXGXPKTPGXRXXXGG 503
P P P G P GG P PP G P G P P R G
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P P P PP PPG G P G PP
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +2
Query: 488 GPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPPXKNFXARAPK 637
GP P P P P G PPG G PP G PP F P+
Sbjct: 728 GPYPGYPGYGP-PGAMRPPAGFAPPPGAPYGYPP--GAPPPAGFHPSHPQ 774
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P P + G P P P GF PPG P G G PP G P
Sbjct: 721 PGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPG--APYGYPPGAPPPAGFHP 770
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = +2
Query: 533 FXXPPGXXXPPGGXXGXP--PXQGXPPXKNFXARAPKRXXXPKXXPLGG 673
F PP P G P P QG PP +F A P++ P GG
Sbjct: 318 FGAPPPQGAPQQGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGG 366
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -1
Query: 603 GXPXXGGXPXXPPGGXXXPGGXXKPR-GXGXXXGXXXXGPKXXXPXPRG 460
G GG PPGG PG P+ G G GP P P G
Sbjct: 402 GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTG 450
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/75 (29%), Positives = 23/75 (30%)
Frame = +2
Query: 410 GPGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPP 589
GPGG P P G GP P P + PP P G PP
Sbjct: 405 GPGGYGPP--PPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVG---APPP 459
Query: 590 XQGXPPXKNFXARAP 634
P N AR P
Sbjct: 460 GAAGAPGGNPFARGP 474
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 453 PPPPGXXXFXFWXPLXXPPX*XRXPGVXGXPXGXXXPQG 569
PPPPG P PP PG G P G +G
Sbjct: 435 PPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNPFARG 473
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 31.9 bits (69), Expect = 0.69
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Frame = +2
Query: 473 GXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQ--GXPPXKNFXARAPK 637
G GP P P P F PPG PP G P Q PP K+ A K
Sbjct: 126 GHHFQGPPQHFPPGPPRPH-FPGPPGPHRPPEHYPGPPRPQAPAAPPPKSLFPSAQK 181
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 31.5 bits (68), Expect = 0.91
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = -1
Query: 612 FXGGXPXXGGXPXXP--PGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAG 451
+ GG GG P P PGG PGG P G G G G P GG G
Sbjct: 93 YSGGLGTPGG-PGNPGGPGGLGTPGGPGTPGGPGNPGGLGGPG-NPGGPGTPGGPG 146
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPG--GXXGXPPXQGXP 604
PA PRG P P PRG P G PG G G P G P
Sbjct: 200 PAGPRGEPGTEYKPGQPGRPGPPGPRGEAGPAGQPGSPGNDGESGKPGNAGRP 252
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = -1
Query: 579 PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXP--XPRGGAG 451
P PPG PGG +P G G G P P GG G
Sbjct: 279 PPGPPGNDGQPGGPGQPGGPGQDGGPGTDAAYCPCPPRTPAGGGG 323
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 410 GPGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPP 589
GPGG P G GP P P G P G P G G P
Sbjct: 234 GPGGPPGQDGHPGDAGAPGAPGQVVAGPGSVGPPGPQGPPGLAGPDG--QPGHGGGGQPG 291
Query: 590 XQGXP 604
QG P
Sbjct: 292 PQGPP 296
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PR G G P P G P PPG G PP QG PP
Sbjct: 686 PGQPRPAGLPP-GVPPMFNLNAPPPPGIPGYPPAPPPPG--VGPPPPQGIPP 734
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXX---PXXXPXPR-GFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PP G GP P P P GF PG PGG G G PP
Sbjct: 75 PVPPVGHHPMMGGPPGMPMMAPRPFPGPGVGFPGAPGMPPFPGGPMGMAGPPGMPP 130
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -1
Query: 603 GXPXXGGXPXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAG 451
G P G P P GG PGG P G G G G G AG
Sbjct: 31 GGPGTPGGPGTP-GGPGTPGGPGTPGGLGTPGGPGTPGGPGTPETSGGTAG 80
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/82 (25%), Positives = 22/82 (26%), Gaps = 2/82 (2%)
Frame = +2
Query: 413 PGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPG--GXXGXP 586
P F PA P G P G PPG PPG G G P
Sbjct: 160 PSASDFCFDCPPGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPPGPPGGPGNDGQP 219
Query: 587 PXQGXPPXKNFXARAPKRXXXP 652
G P P + P
Sbjct: 220 GGPGNPGAPGAVTEVPGQQGPP 241
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 197 PPGXGXPP*XXGGPGXPXWCXXXNSSGPP 283
P G PP GGPG P ++GPP
Sbjct: 176 PAGNAGPPGAPGGPGAPGNTPSGGAAGPP 204
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PPRG P P P G PP PG G PP PP
Sbjct: 780 PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG--PGGPPPNMAPP 829
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXP--PGGXXGXPPXQGXP 604
P P+ G GP P PR F PPG P PG PP QG P
Sbjct: 243 PPGPQVPGSYPSGPADI-PQGPGMPRAF--PPGASAPVAPGMPGAFPPGQGGP 292
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 456 PPPGXXXFXFWXPLXX-PPX*XRXPGVXGXPXGXXXPQGGXWGXPPXRGXPPXKIXG 623
P P F P+ PP G+ P G P+G PP RG PP G
Sbjct: 116 PFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPG 172
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 456 PPPGXXXFXFWXPLXX-PPX*XRXPGVXGXPXGXXXPQGGXWGXPPXRGXPPXKIXG 623
P P F P+ PP G+ P G P+G PP RG PP G
Sbjct: 116 PFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPG 172
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = -1
Query: 606 GGXPXXGGX--PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGP--KXXXPXPRGGAG 451
GG P G P PPG PG P G G GP P GG G
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = -1
Query: 606 GGXPXXGGX--PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGP--KXXXPXPRGGAG 451
GG P G P PPG PG P G G GP P GG G
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/65 (32%), Positives = 21/65 (32%)
Frame = -1
Query: 603 GXPXXGGXPXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAGXXXXKNXXX 424
G P G P PPGG PG P G G G G GGAG
Sbjct: 153 GGPGPKGPPG-PPGGHGEPG----PAGRGGPRGPPGPGGPQGEAGEDGGAGNPGTPGQVR 207
Query: 423 RPPGP 409
P P
Sbjct: 208 SLPSP 212
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXP 604
P P P+G PPG PP G G P G P
Sbjct: 143 PPCKPCPQGPPGPPGPPGPP-GDSGEPGSPGLP 174
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = -1
Query: 603 GXPXXGGXPXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAGXXXXKNXXX 424
G P G P PPG PG +P G GP P GGAG +
Sbjct: 183 GRPGAAGRPG-PPGPRGEPGTEYRPGQAGRAGPPGPRGPPGPEGNP-GGAGEDGNQGPVG 240
Query: 423 RPPGP 409
P P
Sbjct: 241 HPGVP 245
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXP 604
P P P+G PPG PP G G P G P
Sbjct: 143 PPWKPCPQGPPGPPGPPGPP-GDSGEPGSPGLP 174
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = -1
Query: 603 GXPXXGGXPXXPPGGXXXPGGXXKPRGXGXXXGXXXXGPKXXXPXPRGGAGXXXXKNXXX 424
G P G P PPG PG +P G GP P GGAG +
Sbjct: 183 GRPGAAGCPG-PPGPRGEPGTEYRPGQAGRAGPPGPRGPPGPEGNP-GGAGEDGNQGPVG 240
Query: 423 RPPGP 409
P P
Sbjct: 241 HPGVP 245
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 452 PAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
P PPRG P P P G PP PG G PP PP
Sbjct: 780 PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPG--PGGPPPNMAPP 829
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = -1
Query: 606 GGXPXXGGX--PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGP--KXXXPXPRGGAG 451
GG P G P PPG PG P G G GP P GG G
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = -1
Query: 606 GGXPXXGGX--PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGP--KXXXPXPRGGAG 451
GG P G P PPG PG P G G GP P GG G
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPG 207
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXP 604
P P P+G PPG PP G G P G P
Sbjct: 143 PPCKPCPQGPPGPPGPPGPP-GDSGEPGSPGLP 174
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/64 (31%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Frame = -3
Query: 631 GPXPKIFXGGXPLXGGXPXXP----PWGXXXPXGXPKTPGXRXXXGGXXXGXQXXXXXXP 464
GP G G P P P G P G P TPG G G Q P
Sbjct: 200 GPAGPAGPRGTRHSAGVPGKPGDVGPCGPEGPKGAPGTPGKNGAPGDRGFGGQPGVPGEP 259
Query: 463 GGGG 452
G G
Sbjct: 260 GEDG 263
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Frame = -1
Query: 579 PXXPPGGXXXPGGXXKPRGXGXXXGXXXXGP-----KXXXPXPRGGAGXXXXKNXXXRPP 415
P PPG PG KP G GP + P P G G K PP
Sbjct: 147 PACPPGPPGAPGAPGKPGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNG-HPGKPGSQGPP 205
Query: 414 GP 409
GP
Sbjct: 206 GP 207
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = -1
Query: 603 GXPXXGGXPXXP-PGGXXXPG--GXXKPRGXGXXXGXXXXGPKXXXPXPRGGAGXXXXKN 433
G P G P PG PG G PRG G P PRGG G
Sbjct: 203 GPPGPPGHSDEPKPGQPGQPGRAGPRGPRGVAGIKGKDGAPGSPGQPGPRGGPGEPGQDG 262
Query: 432 XXXRPPGP 409
+P P
Sbjct: 263 APGQPGLP 270
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Frame = +2
Query: 410 GPGGRXXXFFXXXXPAPPRGXGXXXLGPXXXX-----PXXXPXPRGFXXPPGXXXPPGGX 574
GPGGR P P G G P P P G PPG P G
Sbjct: 123 GPGGRPGKPGTPGKPGAPGNPGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTP-GE 181
Query: 575 XGXPPXQGXP 604
G P G P
Sbjct: 182 PGGPGPAGSP 191
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 182 KXKKKPPGXGXPP*XXGGPGXPXWCXXXNSSGP 280
K PPG PP G PG W GP
Sbjct: 79 KVNNCPPGPAGPPGEPGAPGDDGWNGDAGQPGP 111
>Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical
protein M7.10 protein.
Length = 220
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 567 PGGXXXPGGXXKPRGXGXXXGXXXXGPK 484
PGG P G P+G G G GPK
Sbjct: 174 PGGLRRPKGPKGPKGPGGPHGKPPGGPK 201
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Frame = +2
Query: 518 PXPRGFXXPPGXXXPPG-----GXXGXPPXQGXP 604
P P G PPG PPG G G P QG P
Sbjct: 217 PGPAGPPGPPGPGGPPGDAGGAGSDGAPGPQGPP 250
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPG 568
P P PRG PPG PPG
Sbjct: 250 PPGPPGPRGEPGPPGPFGPPG 270
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/67 (29%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +2
Query: 410 GPGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPG--GXXGX 583
GP G P P G P P G PPG PG G G
Sbjct: 180 GPQGPPGTAGNDGTPGQPGAPGQVRTVPAPPGNPGQPGEPGAQGPPGEDGRPGNSGPQGP 239
Query: 584 PPXQGXP 604
P QG P
Sbjct: 240 PGPQGEP 246
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 506 PXXXPXPRGFXXPPGXXXPPG 568
P P PRG PPG PPG
Sbjct: 250 PPGPPGPRGEPGPPGPFGPPG 270
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = +2
Query: 488 GPXXXXPXXXPXPRG---FXXPPGXXXPPGGXXGXPPXQGXPP 607
GP P P+G + PP P G G PP Q PP
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPP 714
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = +2
Query: 488 GPXXXXPXXXPXPRG---FXXPPGXXXPPGGXXGXPPXQGXPP 607
GP P P+G + PP P G G PP Q PP
Sbjct: 672 GPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPP 714
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 410 GPGGRXXXFFXXXXPAPPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPP 589
GP G P P G P P P P G PPG PG P
Sbjct: 225 GPQGPPGADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPPGPIGPPGQPGAPGS--SQPG 282
Query: 590 XQGXP 604
QG P
Sbjct: 283 PQGPP 287
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +2
Query: 455 APPRGXGXXXLGPXXXXPXXXPXPRGFXXPPGXXXPPGGXXGXPPXQGXPP 607
A P G G P P P P G PG PG Q PP
Sbjct: 188 AGPDGEGAGYAEPGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPP 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,460,455
Number of Sequences: 27780
Number of extensions: 232672
Number of successful extensions: 1577
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -