Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A09
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    29   5.9  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    29   5.9  

>Z46794-2|CAA86774.1|  950|Caenorhabditis elegans Hypothetical
           protein R06F6.2 protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 490 CQDVNVKR*NASEQLQPIRSFTLKVKRSKRALTSLDSPSFANNAKKQLSAERQRKNLKK 666
           CQ  + +   ASEQ+ P+    L  K     ++S+     A   K+Q+  E  R  +K+
Sbjct: 688 CQSCSKEEIEASEQIHPLVVLELLAKNEHLTISSVRDYIIAWLRKQQIIIEEDRNTIKE 746


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 135 LFKVRSLNKIIKCHAVNLLTTRVVTSKFTSPEELEEQRKHDEQKKKWRKE 284
           LF+ +++ K    H ++ L  +V  +     + L E++K   +KKK R+E
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEKQRLLEEKKRRREKKKRRRE 292


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 135 LFKVRSLNKIIKCHAVNLLTTRVVTSKFTSPEELEEQRKHDEQKKKWRKE 284
           LF+ +++ K    H ++ L  +V  +     + L E++K   +KKK R+E
Sbjct: 243 LFRQQTVTKPPNPHRISNLRAKVEMTNQAEKQRLLEEKKRRREKKKRRRE 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359,138
Number of Sequences: 27780
Number of extensions: 148952
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)