Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A08
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 32 0.12
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.38
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 29 0.66
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 29 1.1
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 2.0
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 27 2.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.7
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.7
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 27 3.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 26 6.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 8.1
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.1
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 491 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSI 664
C++ +M + ++++++ R + ++D+P E ++ DK E KSLE++S S+
Sbjct: 3 CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.38
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -1
Query: 663 IEFDNCSKLLTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 526
+EF CS L +S ILS + E KL G+STSA + K A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.66
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 167 NEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRL 346
NE + PQ T+ +S ISS + + G +LN + S+ ++
Sbjct: 261 NEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVS--SFNSDSHS 318
Query: 347 QRDFMRSNYTNRPKNIPKETPDVKN 421
+D++ +YTN P + KE+ D N
Sbjct: 319 PKDYISQSYTNEP-GLKKESADSFN 342
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +2
Query: 146 ETQQLMQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNEST 316
E ++ +QN+ QK S+ + SNK++ + +N EK + ++ + E +
Sbjct: 46 ENKESLQNDSHSVSQKSSSSSQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKEES 102
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 419 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFE 598
N+E+ + + S+ +GC E + ++ + +++A+ H ++ + E+ F
Sbjct: 56 NIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115
Query: 599 NSAS--RDKMEQLVKSLEQL 652
A+ +DK + +V +E++
Sbjct: 116 RYAASLKDKKKMIVSGIEKV 135
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 27.5 bits (58), Expect = 2.7
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 1/172 (0%)
Frame = +2
Query: 89 FXIFKLKNI*XSLHLXXANETQQLMQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKN 268
F I + K S + AN +L+ EG + +P S+ T+ E +
Sbjct: 23 FTIIRDKTKPRSEFIFYANRIIRLIVEEGLNH---LPVSSAKVTTAQNAEYEGVMFDGRI 79
Query: 269 HEKVLTSTGNSLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELL 448
+ G S+ + + + R + R T++P + P+ ++ K + LL
Sbjct: 80 CGVSIMRAGESMEQGLRECCRSVRIGKILIQRDEETHKPVLHYIKLPE--DISKRYVLLL 137
Query: 449 DDFHTGKLSAFGSG-CSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFEN 601
D L+ GS C+ME +IN+ +QE + L+ + K D F N
Sbjct: 138 DPM----LATGGSAICAMEILINMGCKQEQIIFLNVIASPEGLKNVHDRFPN 185
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 290 TGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKNIPKET 406
TGN N S V ++ +RDF +N NRPK + ++T
Sbjct: 630 TGNIYSNNSPGVKALSSDNFKRDFGDTNAINRPKFVGQQT 669
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +2
Query: 143 NETQQLMQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKV 322
+E+ ++ NE + +IP+ T T+ E + + +L+ + ++ NES KV
Sbjct: 1288 DESACVLTNESSLSQTEIPEEKTENETTAVNGFENSK--KRQFSSLLSGSIDTNNESNKV 1345
Query: 323 SYVN-ERRLQRDFMRSNYTNRPKNIPKETPDVKNME-KALLELL 448
S V ++ +D ++S T I K D+K+ E + L +LL
Sbjct: 1346 SSVEFDKSGPQDIIQS-MTEATFEIEKNIQDLKSEEVQKLSDLL 1388
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 STGNSL-NESTKVSYVNERRLQRDFMRSNYTNRPKN 391
+TGNS NE K S + + D+M SNYT N
Sbjct: 79 ATGNSTYNELVKTSMLYQSGEDSDYMPSNYTTSEGN 114
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/133 (18%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Frame = +2
Query: 155 QLMQNEGEDXEQKIPQSATSPVTS----NKISSEAASLTSKNHEKVLTSTGNSLNESTKV 322
+ ++ E ++ E K+ ++A T N ++ E +L + + +T + + K
Sbjct: 1362 EALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAAAWNEKC 1421
Query: 323 SYVNERRLQR-DFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSG--C 493
+ + L R ++ TN+ K + + + + M+K + L D H + SA
Sbjct: 1422 ENLKKSSLTRFAHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSDAEQI 1481
Query: 494 SMEQMINIRDQQE 532
+ EQ ++ ++E
Sbjct: 1482 TKEQFEQLKSEKE 1494
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 221 TSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVN 334
++NKIS +L+SK K TG + S YVN
Sbjct: 510 STNKISENPTTLSSKVENKNEPKTGENKEPSQTNEYVN 547
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 353 LFEDVFHLRTTPSWIRLDCYQYW-*VLFHDFLMLNLRLRL 237
++ VFH+R TP +LD + VLF + L L LRL
Sbjct: 153 VWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRL 192
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 221 TSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRD 355
TS ++ +A TS H+K TS+ + + V VNE+ ++
Sbjct: 111 TSKPSANSSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQE 155
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 8.1
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Frame = +2
Query: 101 KLKNI*XSLHLXXANETQQLMQNEGEDXEQKIPQSATSPVTSNKISSEA-------ASLT 259
+LK I S + + L +D IP+S P SN++S +
Sbjct: 11 QLKGIDGSFNDPFRQPSMNLPTPPHDDGLPSIPRSTALPNLSNRLSPYSHRNYLPIPEAD 70
Query: 260 SKNHEKVLTSTGNSLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALL 439
S+N E VL S SL + V+ +N + QR +NY +++ +TP + +
Sbjct: 71 SRNLE-VLNSI--SLTTGSVVNQIN-KLYQRSCDNANYLQDLRSLILQTPTAEANATQVT 126
Query: 440 ELLDDFHTGKLSAFGSGCSMEQMINI 517
E L+ K+ S EQ++ +
Sbjct: 127 ESLNQIQ--KILQEASSKDREQIVQV 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,069
Number of Sequences: 5004
Number of extensions: 63860
Number of successful extensions: 238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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