Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A08
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    29   3.7  
06_02_0097 + 11710560-11710859,11712605-11713270                       29   3.7  
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    29   3.7  
03_02_0703 - 10535082-10536779                                         29   3.7  
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695     28   8.5  
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270...    28   8.5  

>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 476 AFGSGCSMEQMI---NIRDQQEHLARLHFRLCADVDKPT-EDNFEN 601
           +F S C ++  +   NI D  E L  +H   C D DKP  E N +N
Sbjct: 435 SFNSSCEVQCPLCGSNISDLSEELRLVHTNSCLDGDKPAKEPNSDN 480


>06_02_0097 + 11710560-11710859,11712605-11713270
          Length = 321

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 657 FDNCSKLLTSCSILSLDAEFSKLSSVGLSTSAHKRKCNLAKCSC 526
           F   SKL   C I S DA+F++  ++     + K  C+ AK  C
Sbjct: 109 FSCWSKLSNKCHICSRDAKFARNIALEKIVESIKSSCSYAKWGC 152


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 503 VPCYNLIQKHLTFLCENHLIAQVVLSPCS*HLGFLLVCSWVCWY 372
           VPC     K + +LC   +  Q V++ C   + F  V S   W+
Sbjct: 598 VPCVVPNNKFMQYLCRKGMTTQNVMAACDFDMRFTFVLSGWAWF 641


>03_02_0703 - 10535082-10536779
          Length = 565

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
 Frame = +2

Query: 287 STGNSLNESTKVSYV---NERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDF 457
           + GN+ N +     +      R+++    S   N  KN P+ +  +K+ E+ L   +DD 
Sbjct: 66  TAGNATNPTDLAKAIFKATSERIEKAVRESAVLNDLKNDPRTSDALKDCEELLDYAIDDL 125

Query: 458 HT--GKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFENSAS---RDKM 622
            T   KL  F +      + +++      A  +   C D        FENS S    +KM
Sbjct: 126 KTTFDKLGGFQTSNFKRAVDDVKTWLSS-ALTYQETCLD-------GFENSTSTEASEKM 177

Query: 623 EQLVKSLEQLSNSI 664
            + +KS ++L+ +I
Sbjct: 178 RKALKSSQELTENI 191


>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
          Length = 293

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 308 ESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETP 409
           E + +SY   R +QR FM  NY    K  P+ TP
Sbjct: 254 ELSDMSYRRMRWVQRKFMIYNYCTDAKRFPQGTP 287


>05_05_0298 -
           23926266-23926442,23926573-23926632,23926822-23927029,
           23927471-23927703,23928806-23928860,23928943-23929649
          Length = 479

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 542 RLHF-RLCADVDKPTEDNFENSASRDKMEQLV 634
           RLHF R+CAD +  T   FE      KM+ L+
Sbjct: 326 RLHFGRICADGENATLSEFEQVLRAMKMDSLI 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,011
Number of Sequences: 37544
Number of extensions: 358351
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)