Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_A08
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 38 0.012
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 32 0.62
AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical... 31 1.4
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q... 29 3.3
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 29 4.4
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 29 4.4
U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor... 29 5.8
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 29 5.8
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor... 29 5.8
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch... 29 5.8
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 37.5 bits (83), Expect = 0.012
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 10/182 (5%)
Frame = +2
Query: 161 MQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNH---EKVLTSTGNSLNESTKVSYV 331
+QN E+ E KI Q I+ L S+N K+ + + L +S ++
Sbjct: 664 IQNSVENFEVKIHQKVDDTKKLLHITENMNELNSQNEWIRAKIKSLSAEPLWDSLLIAQK 723
Query: 332 NERRLQRDFMRSNYTNRPKNIPK--ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQ 505
RR DF NR K I + + + LLE+ ++ K G +E+
Sbjct: 724 MRRRHDNDF--EEIANRRKQITEVIQKSATTKDQPILLEIEQNWDRMKDLFDERGGVLER 781
Query: 506 MINIRDQQEHLARL-----HFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSIER 670
+I + + E + +CAD +P ED N K+E L + +E I
Sbjct: 782 IIKLYEYDEESSTTSEWLREKMICADTIEPKEDESFNEVMVKKLEALTEEVENYKPRIVE 841
Query: 671 LH 676
H
Sbjct: 842 TH 843
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 31.9 bits (69), Expect = 0.62
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +2
Query: 149 TQQLMQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNHEKVL-TSTGNSLNESTKVS 325
T+ ++ + ++ E+ PQ T+P S K E + +TS E V T K
Sbjct: 35 TKPVVLTDDDEEEENAPQKKTAPKRSRKQEKEESDITSDEDELVRGTDEKKKRKGGKKEL 94
Query: 326 YVNERRLQRDFMRSNYTNRPKNIPKETPDVKNMEKALLELLDDF 457
V ++ L F S+ +++ ++ PK K +EK L+ D F
Sbjct: 95 PVGQKTLDYMFKPSSSSSK-RDDPK-----KKVEKTLVNPADFF 132
>AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical
protein Y116A8C.33 protein.
Length = 712
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +2
Query: 101 KLKNI*XSLHLXXANETQQLMQNEGEDXEQKIPQSATSPVTSNKISSEAASLTSKNHEKV 280
K++ + + L +Q L Q + Q + QS S V + S+ K HE +
Sbjct: 554 KMREVASPVTLRMNEMSQMLNQTDEIGISQSVVQSVYSLVDLEPLISQV-----KGHEDI 608
Query: 281 LTSTGNSLNESTKVSYVNERRLQRDFMRSNYTNRPKNIPKETPDVK--NMEKAL 436
+S +++++ +Y++ + R YTN KN+ E PD+ +EKAL
Sbjct: 609 -SSLETAISQAK--AYISRIDVWRAKSLKGYTNPLKNLTAEIPDIDIIPIEKAL 659
>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 85
protein.
Length = 2203
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 188 QKIPQSATSPVTSNKISSEAASLTSKNHEKVLTSTGNSLNESTKVSYVNERRLQRDFMRS 367
Q IPQ P TSN+ + S S + + S+ L E ER+ Q + R
Sbjct: 149 QPIPQHTIPPSTSNQFQQQIQSAASSIFDSSVISSHQKLYEEQCRQIEKERKEQEERKRK 208
Query: 368 NYTNRPKNIPKETPDVK-NMEKALLE 442
+ +E ++ EK LLE
Sbjct: 209 QELEEQRKRNEELKRLRIAEEKRLLE 234
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 362 RSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLA 541
+SN PKN+ + V +EK L +F G G + +I D+++
Sbjct: 877 KSNSLRWPKNLKEAQDIVTKIEKKFKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDE 936
Query: 542 RLHFRLCAD---VDKPTEDNFENSASRDKMEQLVKSLEQL 652
L D D+ +NF N+ ++++ ++ + L+++
Sbjct: 937 NRDSELDEDDSEEDRQKIENFSNAVTKEEDDEFQRELDRM 976
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 362 RSNYTNRPKNIPKETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLA 541
+SN PKN+ + V +EK L +F G G + +I D+++
Sbjct: 877 KSNSLRWPKNLKEAQDIVTKIEKKFKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDE 936
Query: 542 RLHFRLCAD---VDKPTEDNFENSASRDKMEQLVKSLEQL 652
L D D+ +NF N+ ++++ ++ + L+++
Sbjct: 937 NRDSELDEDDSEEDRQKIENFSNAVTKEEDDEFQRELDRM 976
>U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor
protein protein1, isoform c protein.
Length = 605
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 170 EGEDXEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 340
E ED E P++A S N + E + S S N+E+VL + + +E T V VNE
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478
Query: 341 RLQ--RDFMRSNYTNRPK 388
+ N NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 170 EGEDXEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 340
E ED E P++A S N + E + S S N+E+VL + + +E T V VNE
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478
Query: 341 RLQ--RDFMRSNYTNRPK 388
+ N NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496
>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein1, isoform a protein.
Length = 1280
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 170 EGEDXEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 340
E ED E P++A S N + E + S S N+E+VL + + +E T V VNE
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478
Query: 341 RLQ--RDFMRSNYTNRPK 388
+ N NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496
>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
protein protein.
Length = 1280
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 170 EGEDXEQKIPQSATSPVTSN--KISSEAA-SLTSKNHEKVLTSTGNSLNESTKVSYVNER 340
E ED E P++A S N + E + S S N+E+VL + + +E T V VNE
Sbjct: 419 ETEDQETLSPETADSSTNKNSDEFPDEGSQSEASVNNEEVLENVEHVEDECTVVDAVNEN 478
Query: 341 RLQ--RDFMRSNYTNRPK 388
+ N NRP+
Sbjct: 479 TDSSIEENDEENTENRPR 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,354
Number of Sequences: 27780
Number of extensions: 344850
Number of successful extensions: 1071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -