Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A08
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   8.5  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 596 ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPC 694
           E + S DK E  + S+  +S +++RLH +T+PC
Sbjct: 691 EQTESDDK-EGYLHSV--VSGALDRLHYETDPC 720


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 344 DVFHLRTTPSWIRLD 300
           D+ HLR T  W+R D
Sbjct: 218 DILHLRHTKIWLRPD 232


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +2

Query: 365 SNYTNRPKNIPKETPDVKNMEKALLELLDDFH 460
           S Y+  P  +PK  P      K  +  L D H
Sbjct: 370 STYSGSPTELPKHLPTSLTKSKMEVMELSDLH 401


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 606 AEFSKLSSVGLSTSAHKRK 550
           +EFSK+S V  STS   RK
Sbjct: 4   SEFSKISKVDRSTSPLPRK 22


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 614 DKMEQLVKSLEQLSNSIERLHCDTNPCSSTE 706
           D+  QL+ +LE +   ++RL  +TN  +  E
Sbjct: 363 DQHSQLIDTLENVLAIVDRLMDETNQLTLQE 393


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 614 DKMEQLVKSLEQLSNSIERLHCD 682
           DKM+ LV+ L+     +  L CD
Sbjct: 42  DKMKTLVEELKSKPGKLVPLQCD 64


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 296 NSLNESTKVSYVNERRLQRD 355
           N LNE   +  + ERR+ RD
Sbjct: 97  NELNEMCPLEKLKERRIWRD 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,566
Number of Sequences: 438
Number of extensions: 4481
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)