Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A07
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    32   0.13 
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb...    30   0.38 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   2.1  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 723 PKVRLPPLIIVDSYSCYPNYQKKL*NIKSLLQFDLKY*SVSTFHIFTI 580
           P+ +L   +    Y CY NY+ K   +K L Q   KY     FH FT+
Sbjct: 248 PQAKLKKALKQAEYYCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTV 295


>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 4/31 (12%)
 Frame = +3

Query: 417 EKMQKQRILQKAE----MTHKQRVEKFNQHL 497
           E +Q+QR+LQKA+     THK R++++N+ L
Sbjct: 73  ESVQEQRLLQKAKNERLKTHKDRIDEYNRLL 103


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 403 IKICRKKCKNKEYYK 447
           IKIC + C N+EYYK
Sbjct: 357 IKICYEPCDNEEYYK 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,058
Number of Sequences: 5004
Number of extensions: 45415
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)