Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_A06
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = +3

Query: 798 PPXPPLAXXPXKKKXXXP-SPPQXXXGGPPPXP 893
           PP PP    P       P  PP    GGPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +3

Query: 777 AVXPXKNPPXPPLAXXPXKKKXXXPSPPQXXXGGPPPXP 893
           A  P   PP  P+   P       P PP     GPPP P
Sbjct: 745 APAPIPVPPPAPIMGGPPPP----PPPPGVAGAGPPPPP 779


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +3

Query: 786  PXKNPPXPPLAXXPXKKKXXXPSPPQXXXGGPPPXP 893
            P   PP  P +  P +     P PP      PP  P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 892 GXGGGPPXXXWGGXGXXFFFXXGXXARGGXGGFFXG 785
           G  GGPP    GG G    F       GG GGF  G
Sbjct: 195 GGSGGPPPGP-GGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 798  PPXPPLAXXPXKKKXXXPSPPQXXXGGPPPXP 893
            PP P  +  P   K    +PP     G PP P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,601
Number of Sequences: 5004
Number of extensions: 10384
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)