Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P23
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    33   0.047
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.76 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 33.5 bits (73), Expect = 0.047
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 673  PPPPPXXTLPKXSXPPXXKGGGXPPXGP 756
            PPPPP   LPK   P        PP GP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +1

Query: 661  SPKXPPPPPXXTLPKXSXPPXXKG--GGXPPXGPXKXSP 771
            S   PPPPP    P  S PP   G     PP  P   +P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 673 PPPPPXXTLPKXSXPPXXKGGGXPPXGPXKXSP 771
           PPPPP  +    S P   +G   PP  P + +P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 22/96 (22%), Positives = 25/96 (26%)
 Frame = +1

Query: 484 PRXXRFXGXGXPPHPXXGXXGXPPKXGGXTPXKKTXXPKRAXXKGPKTPXKXXXFSXXFS 663
           P   R    G  P P  G    PP      P      P  +  +    P          S
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399

Query: 664 PKXPPPPPXXTLPKXSXPPXXKGGGXPPXGPXKXSP 771
              P  PP     + S PP       PP  P    P
Sbjct: 400 A--PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 667 KXPPPPPXXTLPKXSXPPXXKGGGXPPXGPXKXSP 771
           K PPPPP  +      PP   G       P    P
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 897 PXTPPXGGXPXPGXGPPPPXXGXV 968
           P  PP  G   P   PPPP  G V
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYV 33



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 661 SPKXPPPPPXXTLPKXSXPPXXKG 732
           +P  PPPPP    P    PP   G
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 664 PKXPPPPPXXTLPKXSXPPXXKGGGXPPXGP 756
           P  PP P     P    PP   G G PP  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 897 PXTPPXGGXPXPGXGPPPPXXGXVSXXPP 983
           P  P  GG P P   PPPP        PP
Sbjct: 753 PPAPIMGGPPPP---PPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,988
Number of Sequences: 5004
Number of extensions: 21113
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)