Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P22
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   4.7  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   6.2  

>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 148 YINRANNFRK--NFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQSP 321
           ++NR    +   NF +   +  KEL+ + P+++VFL          P    YT +  + P
Sbjct: 101 FVNRHTGSKPQPNFYSSSESSEKELIWFQPKMRVFLQSLSNMSYLSPSKFRYTTVYSKQP 160

Query: 322 N 324
           N
Sbjct: 161 N 161


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 101 KSKLGIFIKSSQVRLDSSAQILRIP 27
           K  +G+++ + QVR+D+ A IL  P
Sbjct: 764 KQAMGVYLTNYQVRMDTMANILYYP 788


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 341 RTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNS 231
           +TC+F      +S + I P GSV+ + C  AKK  +S
Sbjct: 863 KTCLFCHKRLGKSVISIFPDGSVVHYGC--AKKYVSS 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,799
Number of Sequences: 5004
Number of extensions: 56901
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)