Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P22
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000242-1|AAH00242.1| 190|Homo sapiens mitochondrial ribosomal... 91 7e-18
AF151896-1|AAD34133.1| 153|Homo sapiens CGI-138 protein protein. 90 9e-18
BC005149-1|AAH05149.1| 580|Homo sapiens mucolipin 1 protein. 31 4.2
AK222673-1|BAD96393.1| 580|Homo sapiens mucolipin 1 variant pro... 31 4.2
AK026102-1|BAB15360.1| 580|Homo sapiens protein ( Homo sapiens ... 31 4.2
AJ293970-1|CAC08215.1| 580|Homo sapiens mucolipidin protein. 31 4.2
AJ293659-1|CAC07813.1| 545|Homo sapiens mucolipidin protein. 31 4.2
AF305579-1|AAG42242.1| 581|Homo sapiens mucolipin 1 protein. 31 4.2
AF287270-1|AAG00798.1| 580|Homo sapiens mucolipin protein. 31 4.2
AF287269-1|AAG00797.1| 580|Homo sapiens mucolipin protein. 31 4.2
AF249319-1|AAG10422.1| 580|Homo sapiens mucolipidosis type IV p... 31 4.2
>BC000242-1|AAH00242.1| 190|Homo sapiens mitochondrial ribosomal
protein S23 protein.
Length = 190
Score = 90.6 bits (215), Expect = 7e-18
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Frame = +3
Query: 189 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNL----VVK 356
MA SRLE +G+IF+R L+ G +K ++PLWFDVY AFPP+ EP + RP +
Sbjct: 1 MAGSRLETVGSIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58
Query: 357 EIRPILYKEDVLRAKFHS-NGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG-IPEDEII 530
I+ I Y ED +RAKF+S G G L N + ++ +R V++Y EL+ G E+++
Sbjct: 59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLF 118
Query: 531 EKAAQAVAVE 560
+ +A+ E
Sbjct: 119 VETGKALLAE 128
>AF151896-1|AAD34133.1| 153|Homo sapiens CGI-138 protein protein.
Length = 153
Score = 90.2 bits (214), Expect = 9e-18
Identities = 62/155 (40%), Positives = 86/155 (55%), Gaps = 13/155 (8%)
Frame = +3
Query: 189 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNL----VVK 356
MA SRLE +G IF+R L+ G +K ++PLWFDVY AFPP+ EP + RP +
Sbjct: 1 MAGSRLETVGCIFSRTRDLVRAGVLK--EKPLWFDVYDAFPPLREPVFQRPRVRYGKAKA 58
Query: 357 EIRPILYKEDVLRAKFHS-NGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDE--I 527
I+ I Y ED +RAKF+S G G L N + ++ +R V++Y EL+ G ++E
Sbjct: 59 PIQDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLF 118
Query: 528 IE--KAAQAVAVERHSYAAQKLN---VT-PKNPDS 614
+E KA A V Q LN VT P NP++
Sbjct: 119 VETGKALLAEGVILRRVGEQGLNTEVVTFPGNPNT 153
>BC005149-1|AAH05149.1| 580|Homo sapiens mucolipin 1 protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AK222673-1|BAD96393.1| 580|Homo sapiens mucolipin 1 variant
protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AK026102-1|BAB15360.1| 580|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22449 fis, clone HRC09609. ).
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AJ293970-1|CAC08215.1| 580|Homo sapiens mucolipidin protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AJ293659-1|CAC07813.1| 545|Homo sapiens mucolipidin protein.
Length = 545
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 351 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 410
>AF305579-1|AAG42242.1| 581|Homo sapiens mucolipin 1 protein.
Length = 581
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 387 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 446
>AF287270-1|AAG00798.1| 580|Homo sapiens mucolipin protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AF287269-1|AAG00797.1| 580|Homo sapiens mucolipin protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
>AF249319-1|AAG10422.1| 580|Homo sapiens mucolipidosis type IV
protein protein.
Length = 580
Score = 31.5 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -2
Query: 698 CVLIL*SSTLICXENIF-YISF--SQYLGCNGIRIFRCNI-QFLCSIAVAFDGYCLCGFL 531
C ++L +STL+ + Y++F + + +R+ ++ +F C +AV + GYC CG++
Sbjct: 386 CSILLGTSTLLVWVGVIRYLTFFHNYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWI 445
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,302,492
Number of Sequences: 237096
Number of extensions: 1830084
Number of successful extensions: 3255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -