Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P22
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-6|CAA80139.1|  133|Caenorhabditis elegans Hypothetical pr...    79   6e-15
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    31   1.5  
Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    29   4.4  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    29   4.4  
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    29   5.9  

>Z22176-6|CAA80139.1|  133|Caenorhabditis elegans Hypothetical
           protein ZK1098.7 protein.
          Length = 133

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
 Frame = +3

Query: 198 SRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKY-ARPNLVVKEIRPIL 374
           +R ER G IF+RV GL+  G +   DRPLW+DVY + PP+T P +  +     + IR I 
Sbjct: 6   TRAERSGNIFSRVTGLIRAGQLNWADRPLWYDVYVSSPPLTPPDWNVKLAKYDEPIRSIF 65

Query: 375 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEG--IPEDEIIE 533
           Y+EDVLRAKF+      A +  ++ S  + +++ + +Y  +K+E     +D++ E
Sbjct: 66  YEEDVLRAKFYKTYRSTAGIQ-VDSSRTSVSQQFINEYKLVKSENAEATDDQLFE 119


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = -2

Query: 386 VFLV*DWSYFFDY--KIRTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNSGKYCTN 213
           VFL  +W +F +Y  K+  C F F  W     YI       R   S+ K  + SG + + 
Sbjct: 25  VFLTKNWKHFDNYFLKLYICQFFFNMWMYWNFYI-----TSRLPASTCKDCYLSGWFDSL 79

Query: 212 SFQSATGHVKKFFLKLLARLIYVSLMQTNNLFL 114
           S  S +    KFF+       ++  M  +NLFL
Sbjct: 80  SKDSGSMFPFKFFIFC---QYHLGFMSYSNLFL 109


>Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical
           protein T01H3.5 protein.
          Length = 165

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/98 (22%), Positives = 44/98 (44%)
 Frame = +3

Query: 375 YKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVA 554
           +K DVLR  F    YG++ + +LN+   ++  +L +  +    + I E+   EK    + 
Sbjct: 3   WKNDVLR--FSGFDYGVSKIRMLNEELHSECDQLSKSNESTSLKDITEEPKDEKLESIIE 60

Query: 555 VERHSYAAQKLNVTPKNPDSVTAQVLAEADIKNIFTTN 668
             ++  + ++ N    N     A  + E  I+N +  N
Sbjct: 61  TAKNKESEKEENSHVFNDCEFDA--MTERKIENFYFRN 96


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 276 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 452
           R +W    KA   I    +  P +   ++R +      L+AK  S    L A  ++    
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386

Query: 453 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 596
           N T T R  + Y+ +  EG P DEI+EK   A  +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 276 RPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGL-APVSLLNQS 452
           R +W    KA   I    +  P +   ++R +      L+AK  S    L A  ++    
Sbjct: 329 RCIWKKTGKARQEIEHSLHVSPTIA--QVRILEQSPSFLKAKAGSGSVKLYAKFAVYPAG 386

Query: 453 NETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLNVT 596
           N T T R  + Y+ +  EG P DEI+EK   A  +E +S + + L++T
Sbjct: 387 NYTVTWR--RTYNSI--EG-PRDEIVEKGLSATFLE-NSESMEVLDIT 428


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 447 QSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVE-RHSYAAQKLNVTPKNP 608
           +  E +  ++    + +  EG+ E+EI+E +  A++ E    YA  K +  P  P
Sbjct: 694 EEEEEEPNQIPMASEHIDIEGVDEEEIMEHSVNAISEEILFEYADDKRDDGPSTP 748


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,356
Number of Sequences: 27780
Number of extensions: 312450
Number of successful extensions: 802
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)