Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P19
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   3.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   8.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.5  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 436 FNFDMLSTIALLFVPIIEISVTKYFLSICR 525
           F+FDM+     + +P  E+ + K  +++CR
Sbjct: 84  FDFDMIVKQLEITMPPEEVVIGKEIVAVCR 113


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 303 NYNFNEKNRKHII 265
           N NFNEKN + I+
Sbjct: 76  NGNFNEKNTRDIV 88


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 512 KKYLVTDISIIGTNNNAIV 456
           K+Y+  ++ +IGT+N ++V
Sbjct: 464 KEYIPQNLGVIGTSNLSLV 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,240
Number of Sequences: 438
Number of extensions: 3811
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)