Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P18
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.011
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    33   0.045
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   9.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 29/119 (24%), Positives = 37/119 (31%)
 Frame = +3

Query: 519 GKXXXXFGXXSXCXQPEXPXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXXGRLKP 698
           GK     G  +    P  P PR     +  P    G+   P     P  ++ P  GR  P
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGS-IPLPPQGRSAPPP----PPPRSAPSTGRQPP 377

Query: 699 KNPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFP 875
                       +P    P +S     PL      + PP   P  LPP  P    P  P
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +1

Query: 754 PGKAXKKXXPXPXXGXKQTXPXXXPGASPPEXPXXGPPFSPTGXXXGNSXSP 909
           PG++     P        T P   P + PP  P   PP +P     G   +P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 29/102 (28%), Positives = 32/102 (31%)
 Frame = -3

Query: 933 PPXXKXGXXGXRIPXXXPGWGKGGXXXGXFRGGGPRGXXRXGLFXPXXXXGVXFFXGFSX 754
           PP    G  G       PG G GG     F  GGP G        P       F   F+ 
Sbjct: 77  PPPGAEGGPGAGF-GGFPGAGPGGARTFHFNMGGPGGAQFFSASDPNDIFERVFGHAFAG 135

Query: 753 GGEXMGKXPNTXPGXXGFLALXGPXGXNFFXWGXPGXXGNRF 628
           GG  MG       G    + + G  G      G PG   N F
Sbjct: 136 GG-GMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMF 176


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +1

Query: 730 GFPHXLPXPGKAXKKXXPXPXXGXKQTXPXXXPGASPPEXPXXGPPFS 873
           GF    P            P  G K   P   PGA+    P   PP S
Sbjct: 371 GFSFGKPATDTTTSTSKTGPLFGNKPADPSAKPGATASTTPSEPPPSS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,580
Number of Sequences: 5004
Number of extensions: 22597
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)