Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P18
(962 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.048
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.45
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.8
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 30 2.4
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.2
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 4.2
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 5.5
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 29 7.3
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 28 9.6
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.9 bits (79), Expect = 0.048
Identities = 34/133 (25%), Positives = 38/133 (28%), Gaps = 3/133 (2%)
Frame = +3
Query: 573 PXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXX-GRLKPKNPXXXGGCXGXSPXXP 749
P +T + P P R + P GR P P SP P
Sbjct: 255 PSTPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPP 314
Query: 750 XPX--KSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXPXX 923
P K P P PP G PP P P +G P P
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSP--PPPPPPGG 372
Query: 924 KXGGFSXXPPPGG 962
K GG PP GG
Sbjct: 373 KKGGPPPPPPKGG 385
Score = 30.7 bits (66), Expect = 1.8
Identities = 21/75 (28%), Positives = 22/75 (29%)
Frame = +1
Query: 736 PHXLPXPGKAXKKXXPXPXXGXKQTXPXXXPGASPPEXPXXGPPFSPTGXXXGNSXSPXX 915
P P P P P K P P PP P GPP P + P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPP-PPPPPKGPSPPPPPP 369
Query: 916 LFXXXGGFXXXPPXG 960
GG PP G
Sbjct: 370 PGGKKGGPPPPPPKG 384
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.45
Identities = 27/90 (30%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Frame = +3
Query: 717 GGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGL---PPGXPXXG-----XPLF 872
GG P P P P GA PP PGG+ PP P G P
Sbjct: 1079 GGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPA 1138
Query: 873 PNRGXFXEFXXPXXPXXKXGGFSXXPPPGG 962
P P P GG PPP G
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAG 1168
Score = 29.1 bits (62), Expect = 5.5
Identities = 34/131 (25%), Positives = 35/131 (26%), Gaps = 1/131 (0%)
Frame = +3
Query: 573 PXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXSPXXPX 752
P P P GG G P P G P P G G P P
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVP-----PPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPV 1154
Query: 753 PXKSLXKXXPLPXXGAKTNPPXXXPGGL-PPGXPXXGXPLFPNRGXFXEFXXPXXPXXKX 929
P P PP GG+ PP P G P P
Sbjct: 1155 GGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVP 1214
Query: 930 GGFSXXPPPGG 962
GG PPPGG
Sbjct: 1215 GG--PPPPPGG 1223
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/87 (27%), Positives = 26/87 (29%)
Frame = +3
Query: 696 PKNPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFP 875
P P C SP P P + +P PP LPP P P P
Sbjct: 588 PPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPP-PPLPNHSVLPPPPPPPPPPSLP 646
Query: 876 NRGXFXEFXXPXXPXXKXGGFSXXPPP 956
NR P P G PPP
Sbjct: 647 NR------LVPPPPAPGIGNKFPAPPP 667
Score = 28.7 bits (61), Expect = 7.3
Identities = 31/132 (23%), Positives = 34/132 (25%), Gaps = 2/132 (1%)
Frame = +3
Query: 564 PEXPXPRXLTXETRXPAX--KGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXS 737
P P PR + A KG P + N P P P
Sbjct: 667 PPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNG 726
Query: 738 PXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXP 917
P P P PLP K NPP P L G P P + P P
Sbjct: 727 PSAPAPPLP----PPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPP 782
Query: 918 XXKXGGFSXXPP 953
PP
Sbjct: 783 PLHGASGRPHPP 794
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 879 GWGKGG---XXXGXFRGGGPRGXXRXGL 805
GWG+GG G +RGGG RG R L
Sbjct: 73 GWGRGGGGGGGAGGYRGGGGRGGGRDAL 100
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 3.2
Identities = 30/93 (32%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Frame = -3
Query: 954 GGXXXKTPPXXKXGXXGXRIPXXXPGWGKGGXXXGXFRGGG--------PRGXXRXG-LF 802
GG + P G G R P PG G GG GGG P G R G L
Sbjct: 113 GGGGPPSLPPGAGGGGGARPPA--PGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALG 170
Query: 801 XPXXXXGVXFFXGFSXGGEXMGKXPNTXPGXXG 703
P G G + GG G P PG G
Sbjct: 171 RPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGG 203
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 879 GWGKGGXXXGXFRGGGPRGXXRXG 808
G G+GG G RGGG RG R G
Sbjct: 103 GGGRGGGGGGGGRGGGGRGGGRDG 126
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.1 bits (62), Expect = 5.5
Identities = 22/87 (25%), Positives = 26/87 (29%)
Frame = +3
Query: 702 NPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNR 881
+P GG +P P S P G PP G +PP P P
Sbjct: 346 SPTTPGGGSPSTPCDTPPSPSSGTSPTTPGGGYY--PPTPSVGDVPPSPASGTSPSTPGS 403
Query: 882 GXFXEFXXPXXPXXKXGGFSXXPPPGG 962
G + P G S P GG
Sbjct: 404 GGYSPSTPCSAPPSPSSGTSPTTPGGG 430
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.7 bits (61), Expect = 7.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 900 RIPXXXPGWGKGGXXXGXFRGGGPRGXXRXG 808
+ P G G+GG G RGGG RG G
Sbjct: 202 KTPSKAAGRGRGGASGGRGRGGGGRGFMNFG 232
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.3 bits (60), Expect = 9.6
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = +1
Query: 748 PXPGKAXKKXXPXPXXGXKQTXPXXXPGASPPE---XPXXGPP 867
P PG K P P K P P PP+ P GPP
Sbjct: 181 PKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPP 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,669
Number of Sequences: 37544
Number of extensions: 289318
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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