Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P18
         (962 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   1.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   2.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
 Frame = +3

Query: 786 PXXGAKTNPPXXXPGGL---PPGXPXXGXPLFP 875
           P  G  T P    PGG+   PPG P    P  P
Sbjct: 201 PRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMP 233



 Score = 26.2 bits (55), Expect = 1.5
 Identities = 21/69 (30%), Positives = 23/69 (33%)
 Frame = +3

Query: 675 PXXGRLKPKNPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPX 854
           P  G+  P  P    G  G  P       +L    P    G    PP    GG P G P 
Sbjct: 258 PMMGQPPPIRPPNPMG--GPRPQISPQNSNLSGGMPSGMVGPP-RPPMPMQGGAPGGPPQ 314

Query: 855 XGXPLFPNR 881
              P F NR
Sbjct: 315 GMRPNFYNR 323


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
 Frame = +1

Query: 814 PXXXPGASPPEXPXXGPPFSPT--GXXXGNSXSPXXLFXXXGGFXXXPP 954
           P   P  +PP  P  GPP SP   G   G + S   L    G     PP
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,550
Number of Sequences: 2352
Number of extensions: 7338
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105843456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)