Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P18
(962 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 32 0.70
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.70
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.70
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.70
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.92
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.92
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 3.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical pr... 28 8.6
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 28 8.6
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 31.9 bits (69), Expect = 0.70
Identities = 38/164 (23%), Positives = 46/164 (28%)
Frame = +3
Query: 471 GXXGXXFXGXWAXXXPGKXXXXFGXXSXCXQPEXPXPRXLTXETRXPAXKGGKXGXPXXR 650
G G G G+ G + C P P P + P GK G P
Sbjct: 88 GGGGGYGAGGGGGGGGGEAAGGGGGCTGCCNPGPPGPGGRPGKPGTP----GKPGAPG-- 141
Query: 651 XNPXKKNXPXXGRLKPKNPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPG 830
NP +P P C P P P + + G+ P P
Sbjct: 142 -NPGASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPA 200
Query: 831 GLPPGXPXXGXPLFPNRGXFXEFXXPXXPXXKXGGFSXXPPPGG 962
G PPG G P N G + P G P P G
Sbjct: 201 G-PPG--PAGPP--GNDGQPGQPGGPGQDGASSAGGEAGPGPAG 239
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXPXXKXGGFSXXPPP 956
PP PGGLPP P P G P P GGF PPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGC-----PPPPPPPPPGGFKGGPPP 786
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +3
Query: 564 PEXPXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXSPX 743
P P P L T P G P P P G P P GG G P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 744 XPXP 755
P P
Sbjct: 787 PPPP 790
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEF-XXPXXPXXKXGGFSXXPPP 956
PP PGGLPP G P P G P P GG PPP
Sbjct: 727 PPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXPXXKXGGFSXXPPP 956
PP PGGLPP P P G P P GGF PPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGC-----PPPPPPPPPGGFKGGPPP 786
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +3
Query: 564 PEXPXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXSPX 743
P P P L T P G P P P G P P GG G P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
Query: 744 XPXP 755
P P
Sbjct: 787 PPPP 790
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEF-XXPXXPXXKXGGFSXXPPP 956
PP PGGLPP G P P G P P GG PPP
Sbjct: 727 PPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXPXXKXGGFSXXPPP 956
PP PGGLPP P P G P P GGF PPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGC-----PPPPPPPPPGGFKGGPPP 369
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +3
Query: 564 PEXPXPRXLTXETRXPAXKGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXSPX 743
P P P L T P G P P P G P P GG G P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
Query: 744 XPXP 755
P P
Sbjct: 370 PPPP 373
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 810 PPXXXPGGLPPGXPXXGXPLFPNRGXFXEF-XXPXXPXXKXGGFSXXPPP 956
PP PGGLPP G P P G P P GG PPP
Sbjct: 310 PPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.92
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +3
Query: 729 GXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXP 908
G +P P P S P P +T P PG PP P P P G P
Sbjct: 282 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGG---MPPP 336
Query: 909 XXPXXKXGGFSXXPPP 956
P + G PPP
Sbjct: 337 PPPGMRYPGGMPPPPP 352
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/74 (29%), Positives = 23/74 (31%)
Frame = +3
Query: 738 PXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXP 917
P P + P P PP P G PG P G P P F P
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPG-- 329
Query: 918 XXKXGGFSXXPPPG 959
GG PPPG
Sbjct: 330 ---MGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.92
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +3
Query: 729 GXSPXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXP 908
G +P P P S P P +T P PG PP P P P G P
Sbjct: 292 GMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGP--PGMGG---MPPP 346
Query: 909 XXPXXKXGGFSXXPPP 956
P + G PPP
Sbjct: 347 PPPGMRYPGGMPPPPP 362
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/74 (29%), Positives = 23/74 (31%)
Frame = +3
Query: 738 PXXPXPXKSLXKXXPLPXXGAKTNPPXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXP 917
P P + P P PP P G PG P G P P F P
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP--GMPGMPPPPPPSRFGPPG-- 339
Query: 918 XXKXGGFSXXPPPG 959
GG PPPG
Sbjct: 340 ---MGGMPPPPPPG 350
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/121 (23%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Frame = +3
Query: 612 AXKGGKXGXPXXRXNPXKKNXPXXGRLKP---KNPXXXGGCXGXSPXXPXPXKSLXKXXP 782
A GK G P P P G P K P C P P P P
Sbjct: 114 AGNPGKPGKPGKPGAPGNPGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAGP 173
Query: 783 LPXXGAKTNP-PXXXPGGLPPGXPXXGXPLFPNRGXFXEFXXPXXPXXKXGGFSXXPPPG 959
G+ P P PG P P G P G + P P
Sbjct: 174 DGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPA 233
Query: 960 G 962
G
Sbjct: 234 G 234
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 29.5 bits (63), Expect = 3.7
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Frame = -3
Query: 915 GXXGXRIPXXXPGWGKGGXXXGXFRGGGPRGXXRXGLFXPXXXXGVXFFXGFSXGG-EXM 739
G G G+G+GG G GGG G G G + G+ GG M
Sbjct: 81 GSGGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGM 140
Query: 738 GKXPNTXPGXXGFLALXGPXGXNFFXWGXPGXXGNRF 628
G P G G+ G G +F +G G G +
Sbjct: 141 GGGPGGY-GMGGY-GGGGGGGGDFGGYGGGGMGGGGY 175
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/83 (26%), Positives = 24/83 (28%)
Frame = +3
Query: 618 KGGKXGXPXXRXNPXKKNXPXXGRLKPKNPXXXGGCXGXSPXXPXPXKSLXKXXPLPXXG 797
K GK G P P + K P C P P P P G
Sbjct: 120 KPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPD---GPAGPAGPDG 176
Query: 798 AKTNPPXXXPGGLPPGXPXXGXP 866
+P P G PPG P P
Sbjct: 177 EAGSPAAPSPPG-PPGPPGPAGP 198
>Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical
protein F12F6.9 protein.
Length = 427
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 765 GFSXGGEXMGKXPNTXPGXXGFLALXGPXGXNFFXWGXPGXXG 637
G S G P PG G L GP G + +G PG G
Sbjct: 180 GKSAMGGFGSPGPKGVPGAKGGSGLQGPRGKRNYIYGPPGPMG 222
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 879 GWGKGGXXXGXFRGGGPRG 823
GWG+GG G F GGG RG
Sbjct: 85 GWGRGGGGRG-FYGGGRRG 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,887
Number of Sequences: 27780
Number of extensions: 222779
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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