Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P16
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    28   2.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    28   2.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.6  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.3  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   8.3  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    26   8.3  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   8.3  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  FWDWRKHGAVTDIKDQGKC 97
           FW+W + G   DI+D  KC
Sbjct: 406 FWEWFQRGIDPDIEDPSKC 424


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 227 NGGLMDNAFKYIKDNGGIDTEQTY----PYEGVDDKCR-YNPKNTGAEDVGFVDIP 379
           +G ++DN     KDN G+D +Q +     Y GV  K     PK   + +V F  +P
Sbjct: 229 DGTILDNLVTLRKDNTGLDIKQLFIGSEGYLGVITKLSVICPKRPSSTNVAFFGVP 284


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 245 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVG 424
           N ++Y+KD+  I        +GVDDK  +       + +GF D    D   ++  +  +G
Sbjct: 293 NDYRYLKDSVHI-------IDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMG 345

Query: 425 PVSVAIDAS 451
            + V  D S
Sbjct: 346 NIDVGADRS 354


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 425 PVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHG 526
           P S + D    SF  +SSG +++E  + +D D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 170 SLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 310
           SL EQ  NL+    QY     NG +      Y   N   +T + YPY G
Sbjct: 28  SLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 260 IKDNGGIDTEQTYPYEGVDDKCRYN 334
           IK NGGI    T P   +D K  YN
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYN 204


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 1/116 (0%)
 Frame = +2

Query: 245 NAFKYIKDNGGIDTEQTYPYEGVDDKCRYNPKNTGAEDV-GFVDIPEGDEQKLMEAVATV 421
           N  K++  NG I   Q  P    DD    N    G  D    +  P     +  ++    
Sbjct: 100 NGPKHVAKNGLIPLTQRKPNCVWDDAPVDNDSTAGNLDSDSALPTPSVTTNEAADSSRAS 159

Query: 422 GPVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHGVLVVGYGTDEQGVDYWLVKNS 589
            PV+  +       ++ +S + N    ++TD+         G D+   D    K+S
Sbjct: 160 SPVTRVVAVHDNKKKIINSNISNAPPFNNTDVQASARPPAAGQDDSAADASTTKSS 215


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 592 PRVLHEPVVHALLVGAVT 539
           P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,072
Number of Sequences: 5004
Number of extensions: 45420
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)