Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P14
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   221   7e-58
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   112   3e-25
U88181-5|AAB42304.1|  140|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  221 bits (539), Expect = 7e-58
 Identities = 103/140 (73%), Positives = 117/140 (83%)
 Frame = +3

Query: 93  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 272
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 273 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 452
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 453 CLRRRTYRAHGRINPYMSSP 512
            LRRRTYRAHGRINPYMSSP
Sbjct: 126 KLRRRTYRAHGRINPYMSSP 145


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  112 bits (270), Expect = 3e-25
 Identities = 71/140 (50%), Positives = 82/140 (58%)
 Frame = +3

Query: 93  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 272
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 273 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 452
              +    + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 453 CLRRRTYRAHGRINPYMSSP 512
            LRRRTYRAHGRINPYMSSP
Sbjct: 98  KLRRRTYRAHGRINPYMSSP 117


>U88181-5|AAB42304.1|  140|Caenorhabditis elegans Hypothetical
          protein C55B6.5 protein.
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 16 RSHYREFLKICFSCHI 63
          R+H +EFLK+ F CHI
Sbjct: 17 RNHLQEFLKLSFECHI 32


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 344 GFLGPATLCCAKLLCLS--TATNAAVEATEWNTLFLFDHVFEVTNSTTERHLPDCHSGLI 171
           G  G  T C     C S  T  N   +++  N ++  +  +  + ST  R+  DC+SG +
Sbjct: 81  GTTGSGTYCTTSYSCRSGETCMNNRCQSSYSNNMYNSNSQYSNSGSTC-RYSTDCYSGQM 139

Query: 170 C 168
           C
Sbjct: 140 C 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,973
Number of Sequences: 27780
Number of extensions: 344241
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)