Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P12
         (965 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           69   5e-14
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.1  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 69.3 bits (162), Expect = 5e-14
 Identities = 33/39 (84%), Positives = 34/39 (87%)
 Frame = +3

Query: 276 RFFSRNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 392
           + F  NVIRDAVTYTEH KRKTVTAMDVVYALK QGRTL
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTL 98



 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 35/58 (60%), Positives = 37/58 (63%)
 Frame = +2

Query: 116 KAWGQGGATNGTGKVLKXXXSRKXRSLPFERLARRGGVKRISGLIYEETRSVLKVFLE 289
           K  G+GGA     KVL        +     RLARRGGVKRISGLIYEETR VLKVFLE
Sbjct: 9   KGLGKGGAKRHR-KVLGDNIQGITKPA-IRRLARRGGVKRISGLIYEETRGVLKVFLE 64


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 161 ELFRCRLSRXPVPKPCP 111
           EL R  LS+ P P  CP
Sbjct: 553 ELHRASLSKTPQPPQCP 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,674
Number of Sequences: 438
Number of extensions: 2102
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)