Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P11
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 237 1e-62
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 225 3e-59
11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872 65 6e-11
06_03_0752 - 24171847-24174321 31 0.94
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 31 1.6
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 30 2.9
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 29 6.6
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 6.6
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 8.8
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418... 28 8.8
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 237 bits (579), Expect = 1e-62
Identities = 107/131 (81%), Positives = 119/131 (90%), Gaps = 2/131 (1%)
Frame = +3
Query: 459 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK--MDEVLYSIAEKVKNFAVI 632
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+ MDEVL ++AE +KNFAVI
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQGMMDEVLAAVAETIKNFAVI 60
Query: 633 YLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIET 812
YLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI+ET
Sbjct: 61 YLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 120
Query: 813 VYRGARKGRXL 845
VYRGARKGR L
Sbjct: 121 VYRGARKGRGL 131
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 225 bits (551), Expect = 3e-59
Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 26/161 (16%)
Frame = +3
Query: 459 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMK-------------------- 578
MSY+L HLH+GW VDQAIL+EE+R+V+IRFGHDWD TCM+
Sbjct: 1 MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQICCGDDLDSFARFRILWREL 60
Query: 579 ------MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDL 740
MDEVL ++AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDL
Sbjct: 61 SVYLTTMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDL 120
Query: 741 GTGNNNKINWPLEDKQEMIDIIETVYRGARKGRXLVXXPKD 863
GTGNNNKINW L+DKQE IDI+ETVYRGARKGR LV PKD
Sbjct: 121 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 161
>11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872
Length = 130
Score = 65.3 bits (152), Expect = 6e-11
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Frame = +3
Query: 462 SYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 641
S +L L +VD AI D+V+V+RFG D C+ +D++L + + FA + LV
Sbjct: 3 SALLPTLRRKPEVDAAIRDTLDKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALV 62
Query: 642 DI--TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIE 809
D+ E+ + +++ +FFF +H+ +D GT ++ K KQ+ ID++E
Sbjct: 63 DMDSEEMQVYIDYFDITLVPATIFFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120
>06_03_0752 - 24171847-24174321
Length = 824
Score = 31.5 bits (68), Expect = 0.94
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +3
Query: 657 PDFNKMY--ELYDPCTVMFF--FRNKHIMIDLGTGNN 755
P +N+ Y E++DPCTV+ F N H+ G GNN
Sbjct: 450 PTWNEQYTWEVFDPCTVITIGVFDNNHLGNGNGNGNN 486
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 758 IVVASPQVNHYVFVAEEEHHCAW 690
+V P+VN ++F EE HH W
Sbjct: 46 VVSLDPEVNRFIFQQEEPHHVQW 68
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 756 CCCQSPSQSLCVCCGRRTSLCMDRIIHTFY*NLEP 652
CC Q P + +C T LC DR ++ F+ N P
Sbjct: 439 CCGQGPYNGVGLCTALST-LCPDRSLYVFWDNFHP 472
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +3
Query: 477 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEV 656
H + W + + ++VVI F W C + V +A+K N AV VD+ E+
Sbjct: 18 HSLDEWTIQIEEANSAKKLVVIDFTASWCGPCRIIAPVFADLAKKHTN-AVFLKVDVDEL 76
Query: 657 PDFNKMYELYDPCTVMF 707
+ + + T +F
Sbjct: 77 KPIAEQFSVEAMPTFLF 93
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 674 HFIKIWNLCNVN*IYDSKIFYFFR 603
H I++W+LC+V+ I+ ++ + FR
Sbjct: 774 HIIQLWDLCHVSIIHRTQFYLLFR 797
>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 383 NSNFQKKEYRNNRLFEIIHKVVYLQN-ELYARPSTQWLASRSGHSIRRRPCSGYKVWTR 556
+ +FQK E R ++ + YL + +LYA + LA +R C GY+ W R
Sbjct: 1222 SDDFQKTEQRGCISGRLLVRDRYLDDADLYATSAYVGLALPGDVGSWQRECKGYQFWCR 1280
>07_03_1550 +
27641099-27641288,27641433-27641646,27641738-27641843,
27642213-27642257,27642275-27642540,27642980-27642991,
27643201-27643480,27643716-27643823,27644276-27644362,
27644448-27644552,27644995-27645125,27645249-27645309
Length = 534
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +3
Query: 456 KMSYMLGHL-HNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVI 632
+M + + H H G + + E R+V + + C + +L + ++
Sbjct: 423 EMGFDISHTKHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHF 482
Query: 633 YLVDITEVPDFNKMYELY-DPCTVMFFFRNKHIM 731
+DI E P+ + + PC + FF+NK ++
Sbjct: 483 VEIDIEEDPEIAEAAGIMGTPC--VQFFKNKEML 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,756,936
Number of Sequences: 37544
Number of extensions: 410706
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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