Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P11
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071048-1|AAL48670.1|  142|Drosophila melanogaster RE13747p pro...   283   2e-76
AE014134-734|AAF51017.2|  142|Drosophila melanogaster CG3058-PA ...   283   2e-76
AE014298-718|AAF46018.2|  157|Drosophila melanogaster CG3315-PA ...    38   0.014
AJ507731-1|CAD45644.1|  157|Drosophila melanogaster thioredoxinT...    38   0.025
AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein...    31   2.1  

>AY071048-1|AAL48670.1|  142|Drosophila melanogaster RE13747p
           protein.
          Length = 142

 Score =  283 bits (695), Expect = 2e-76
 Identities = 128/135 (94%), Positives = 130/135 (96%)
 Frame = +3

Query: 459 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 638
           MSYML HLHNGWQVDQAILSEEDRVVVIRFGHDWDP CMKMDEV+YSIAEKVKNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAEKVKNFAVIYL 60

Query: 639 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVY 818
           VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI+ETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIVETVY 120

Query: 819 RGARKGRXLVXXPKD 863
           RGARKGR LV  PKD
Sbjct: 121 RGARKGRGLVVSPKD 135


>AE014134-734|AAF51017.2|  142|Drosophila melanogaster CG3058-PA
           protein.
          Length = 142

 Score =  283 bits (695), Expect = 2e-76
 Identities = 128/135 (94%), Positives = 130/135 (96%)
 Frame = +3

Query: 459 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 638
           MSYML HLHNGWQVDQAILSEEDRVVVIRFGHDWDP CMKMDEV+YSIAEKVKNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAEKVKNFAVIYL 60

Query: 639 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVY 818
           VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI+ETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIVETVY 120

Query: 819 RGARKGRXLVXXPKD 863
           RGARKGR LV  PKD
Sbjct: 121 RGARKGRGLVVSPKD 135


>AE014298-718|AAF46018.2|  157|Drosophila melanogaster CG3315-PA
           protein.
          Length = 157

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 25/99 (25%), Positives = 48/99 (48%)
 Frame = +3

Query: 468 MLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI 647
           M+  + N   +DQ ++  ED++VVI F  DW   C  +   L  +A++  +  V+  V++
Sbjct: 1   MVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAQQYSDRVVVLKVNV 60

Query: 648 TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 764
            E  D    Y +    T +F      + + +G  N++K+
Sbjct: 61  DENEDITVEYNVNSMPTFVFIKGGNVLELFVGC-NSDKL 98


>AJ507731-1|CAD45644.1|  157|Drosophila melanogaster thioredoxinT
           protein.
          Length = 157

 Score = 37.5 bits (83), Expect = 0.025
 Identities = 25/99 (25%), Positives = 47/99 (47%)
 Frame = +3

Query: 468 MLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI 647
           M+  + N   +DQ ++  ED++VVI F  DW   C  +   L  +A +  +  V+  V++
Sbjct: 1   MVYPVRNKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNV 60

Query: 648 TEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 764
            E  D    Y +    T +F      + + +G  N++K+
Sbjct: 61  DENEDITVEYNVNSMPTFVFIKGGNVLELFVGC-NSDKL 98


>AF313480-1|AAG29546.1| 2797|Drosophila melanogaster gamma dynein
           protein.
          Length = 2797

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -3

Query: 355 RTTEQILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFYRSVFKKLCLLRLTSDFRVV* 176
           RT  + L+L  +      + D+  L       +VT+HV  R +F  LC LR+ S      
Sbjct: 257 RTNNKFLVLL-NFFIDLTVKDLTSLDRIRFETMVTIHVHQRDIFDDLCTLRIKSAGDFEW 315

Query: 175 SRRCLFCY-FITKRMFCEIENFKFXXXX*YVGIT 77
            ++  F Y      +   I +  F     Y+G+T
Sbjct: 316 QKQARFYYNEDNDDVIVGITDVNFVYQNEYLGVT 349


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,579,573
Number of Sequences: 53049
Number of extensions: 767435
Number of successful extensions: 1507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)