Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P09
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0462 + 23131433-23132836 33 0.31
12_02_0300 - 17057525-17057770 33 0.41
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 32 0.54
03_01_0285 + 2205165-2206781 31 1.2
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 29 3.8
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 5.0
12_01_0226 + 1715211-1716761 29 5.0
11_01_0228 + 1768318-1769871 29 5.0
07_03_1404 + 26329179-26329455,26329602-26330878 29 5.0
08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406 29 6.7
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 29 6.7
11_01_0551 + 4361640-4363386,4363443-4363687 28 8.8
11_01_0230 - 1788199-1789746 28 8.8
08_01_0038 - 282431-283954 28 8.8
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 28 8.8
>02_04_0462 + 23131433-23132836
Length = 467
Score = 33.1 bits (72), Expect = 0.31
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 181 PQMETDLFLIVFVVDLFIIFGQGTITESKFQHSTI 77
PQ +TDL ++ V D+F I G+GT+ + + T+
Sbjct: 271 PQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTV 305
>12_02_0300 - 17057525-17057770
Length = 81
Score = 32.7 bits (71), Expect = 0.41
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 491 RIHWGRSVWTRREGREPYRLTSIT 562
R WGRS W RR+GR YR++ T
Sbjct: 18 RKRWGRSWWRRRKGRGSYRISGNT 41
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 32.3 bits (70), Expect = 0.54
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 116 LPEYYKQIYDKYNQKQIGFHLGASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLG 295
LP++ K D + K + LGA PA+ L ++ V+ VL SF + N + L
Sbjct: 83 LPQHSKWATD--HGKTFLYWLGAVPAVSLGRVEQVKQVLLERTGSFTKNYMNAN-LEALL 139
Query: 296 GNMLFLDDLPRWKILRQKLSPAFS 367
G L L + W+ R+ + PAF+
Sbjct: 140 GKGLILANGEDWERHRKVVHPAFN 163
>03_01_0285 + 2205165-2206781
Length = 538
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +2
Query: 161 QIGFHLGASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRWKIL 340
Q F L V D +V+ + SNF ++ + + DVLGG +F D RW+
Sbjct: 80 QCRFWLAGFRFFVTCDPDNVRHIFTSNFDNYPKGDVFADMFDVLGGG-IFNTDGERWRRQ 138
Query: 341 RQKLSPAFS*PSAQGHV 391
R K + P + V
Sbjct: 139 RNKAQMLMTTPRFRAFV 155
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/56 (41%), Positives = 27/56 (48%)
Frame = +1
Query: 325 SMEDPQTEAVPGLQLAFGSRPCTKPLRRLPATSPTISLLTNVQ*KNLSMQYSSTLP 492
S EDP +P L L F P T P PA +PTIS T N + + SST P
Sbjct: 741 SGEDPSY--IPLLPLGFAIFPATSPS---PAAAPTISSSTTTTTGNGNGETSSTPP 791
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 155 QKQIGFHL-GASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRW 331
+ +IG + G +V + DV+ +L +NF ++ + A+ + G+ LF D +W
Sbjct: 68 EMRIGLWIPGMRSGIVTGNPADVEHILRTNFANYPKGQHAIGTLEDFLGHGLFNSDGEQW 127
Query: 332 KILRQKLSPAFS 367
R+ S FS
Sbjct: 128 LWQRKNASYEFS 139
>12_01_0226 + 1715211-1716761
Length = 516
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 155 QKQIGFHL-GASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRW 331
+ ++GF + G ++ + DV+ +L +NF ++ + A+ + G+ LF D +W
Sbjct: 69 EMRMGFWIPGMRTGIITGNPADVEHILRTNFANYPKGEHAIGMLEDFLGHGLFNSDGEQW 128
Query: 332 KILRQKLSPAFS 367
R+ S FS
Sbjct: 129 LWQRKNASYEFS 140
>11_01_0228 + 1768318-1769871
Length = 517
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 155 QKQIGFHL-GASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRW 331
+ ++GF + G ++ + DV+ +L +NF ++ + A+ + G+ LF D +W
Sbjct: 69 EMRMGFWIPGMRTGIITGNPADVEHILRTNFANYPKGEHAIGMLEDFLGHGLFNSDGEQW 128
Query: 332 KILRQKLSPAFS 367
R+ S FS
Sbjct: 129 LWQRKNASYEFS 140
>07_03_1404 + 26329179-26329455,26329602-26330878
Length = 517
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +2
Query: 158 KQIGFHLGASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRWKI 337
K + GA P + L D+ V+ VL S+ Y + + L G L L D WK
Sbjct: 94 KTFMYWFGARPTICLADVSMVRQVL-SDRTGMYPKNVSNPYFARLLGKGLVLTDGDEWKR 152
Query: 338 LRQKLSPAFS 367
R+ + PAF+
Sbjct: 153 HRKVVHPAFN 162
>08_02_0461 - 17432493-17432878,17434327-17434611,17435911-17436406
Length = 388
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 688 MKTSSYSPKKVILSHLKSLGNVLPMKN 608
M+ S+ S K+ S LKS GNV+P +N
Sbjct: 295 MEKSAMSSNKMATSLLKSCGNVMPCRN 321
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 683 NVFVFTKESHIKPLEESRECAANEKYDVCF 594
N+ V T E+ K E+ R+ AN K+DVCF
Sbjct: 126 NLSVLT-ETGAKQAEKCRDALANMKFDVCF 154
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 162 KSVSIWGPVRRWSSE----ISKTSRPCWQATSR 248
+ V IWG +RRW + + T CW+ S+
Sbjct: 576 EDVEIWGGLRRWRDDGAEMVKLTKAMCWEMVSK 608
>11_01_0230 - 1788199-1789746
Length = 515
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 155 QKQIGFHL-GASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADVLGGNMLFLDDLPRW 331
+ +IG + G +V + DV+ +L +NF ++ + A+ + G+ LF D +W
Sbjct: 68 EMRIGLWIPGMRSGIVTGNPADVEHILRTNFANYPKGQHAIGMLEDFLGHGLFNSDGEQW 127
Query: 332 KILRQKLSPAFS 367
R+ S FS
Sbjct: 128 LWQRKNASYEFS 139
>08_01_0038 - 282431-283954
Length = 507
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 113 SLP-EYYKQIYDKYNQKQIGFHLGASPALVLRDLQDVQAVLASNFQSFYRRGFAVNDADV 289
SLP + + + K+ + HLGA P LV+ + QA+L ++ + F R + AD+
Sbjct: 55 SLPHKSLRDLATKHGPDLMLLHLGAVPTLVVSSARTAQAILRTHDRVFASRPYN-TIADI 113
Query: 290 L 292
L
Sbjct: 114 L 114
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 631 GNVLPMKNTMFAL--SEGLSAFPATCDRXKSIRLSPFSSSPNTATPMDAVVYLSTA-SKG 461
G+++ N F L S+ +A P + SIR + ++ A+P DA + A SKG
Sbjct: 729 GSMISNGNVSFGLCQSQSTNADPRSTPEGSSIRAAAIAAGARIASPSDAASIIKAAQSKG 788
Query: 460 SFIAR 446
+ R
Sbjct: 789 AIHIR 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,626,458
Number of Sequences: 37544
Number of extensions: 436300
Number of successful extensions: 1406
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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