Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P08
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.66 
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    28   2.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.2  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   6.2  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -3

Query: 672  SAVLPKLQSXLKDQHEPHFPWSLMSVTAPCFLQSTCSGSFTLAGDMNLAPRTLPP 508
            S  L KL S L++QHE  F      +T   FL+ T      L   +NL    L P
Sbjct: 1708 SGKLKKLHSQLEEQHETFFRAEQQRMTQLGFLKETVKKQEKLLKKLNLRQEQLIP 1762


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 600 TSRTKGSVAHAGPSXTTGALEGQHFRQSGYLVSLSEQNLIDCSEQYGNNGCNGGLMDNAF 779
           T++T GS     P   +  L G  F  +G L +L+ Q   D  +QYG        +   F
Sbjct: 224 TTQTPGS--KPVPEGNSDCLSGISFVITGILETLTRQEATDLIKQYGGKVTGAPSVRTDF 281

Query: 780 KYIKDNGG 803
             + +N G
Sbjct: 282 ILLGENAG 289


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 618 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 532
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +3

Query: 696 SLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 836
           SL EQ  NL+    QY     NG +      Y   N   +T + YPY G
Sbjct: 28  SLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 684 RTDGSAVLPKLQSXLKDQHEPHFPWSLMSVTAPCFLQST--CSGSF 553
           + D S  L K      D  EP+F   L  +T  C L +   CSG+F
Sbjct: 744 KCDTSKSLAKSLDECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTF 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,565
Number of Sequences: 5004
Number of extensions: 64803
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)