Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P07
(946 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 33 0.44
01_07_0082 - 40965947-40967023 31 1.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.3
05_01_0141 - 937428-937717,938483-938705 29 4.1
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.4
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 7.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 7.1
01_05_0717 - 24571967-24572881 28 9.4
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 32.7 bits (71), Expect = 0.44
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGGXXFF 874
PPP PPPP G GGG F+
Sbjct: 9 PPPPPPPQHPPPPQAGGGGGGEFY 32
>01_07_0082 - 40965947-40967023
Length = 358
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGGXXFFPXGG 862
PP PPPP G GGG + P G
Sbjct: 270 PPQAGYGYPPPPPQAGYGGGYGYPPQAG 297
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/86 (26%), Positives = 25/86 (29%)
Frame = +3
Query: 561 PXXXGGGGXXSPPXXGGXCFPQXXGGTPXKXFFXXGPXXGPXXXXGXGFXXFFPXAPPPX 740
P G G PP GG Q P P P G P PPP
Sbjct: 1113 PPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGP-----PAPPPPA 1167
Query: 741 XXKXKKXPPXRXGGXXPPXXXXKXXG 818
+ PP GG PP + G
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHG 1193
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGG 889
PP G PPPP GG GG
Sbjct: 1114 PPGGITGVPPPPPIGGLGG 1132
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGGXXFFPXG 865
PPP PPPP G GGG + P G
Sbjct: 40 PPP--PTAYPPPPPAGYGGGYGYPPAG 64
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
PPPP K PP G PPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPP 348
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
PPPP K PP G PPP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPP 357
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
PPPP K PP G PPP
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPP 366
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGG 886
PPP PPPP GG GG
Sbjct: 357 PPPKGPSPPPPPPPGGKKGG 376
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGGXXFFPXGG 862
PP G PPPP G GG P GG
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -1
Query: 703 PXPXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGG-EXXPPPPXXXG 560
P P GP P K PP PP GG + PPPP G
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
P PP PP K GG PPP
Sbjct: 618 PRPPGAPPPPPPPGKPGGPPPP 639
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
P PP PP K GG PPP
Sbjct: 923 PRPPGAPPPPPPPGKPGGPPPP 944
>01_05_0717 - 24571967-24572881
Length = 304
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 918 PPPPXGGXGGGXXF 877
PPPP GG GGG F
Sbjct: 14 PPPPRGGGGGGGEF 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,000
Number of Sequences: 37544
Number of extensions: 321622
Number of successful extensions: 1724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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