Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P07
(946 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 32 0.52
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 4.8
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 6.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.4
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.5
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 697 PXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPPP 572
P GP P G PP F PP G PPPP
Sbjct: 124 PPPCFGPACAPSAPIIVNGPPPCFGPACPPPCFGPACAPPPP 165
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
PPPP PP GG PPP
Sbjct: 771 PPPPPPSAIPLPPRLQGGIPPP 792
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 728 PPPPXXKXKKXPPXKXGGXPPP 793
PPPP PP GG PPP
Sbjct: 771 PPPPPPSAIPLPPRLQGGIPPP 792
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -1
Query: 703 PXPXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPPP 572
P P GP G+PP G PP G PPPP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGG 886
PP G PPPP GG GG
Sbjct: 764 PPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -1
Query: 703 PXPXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPPP 572
P P GP G+PP G PP G PPPP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGG 886
PP G PPPP GG GG
Sbjct: 764 PPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = -1
Query: 703 PXPXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPPP 572
P P GP G+PP G PP G PPPP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 945 PPPGXXXXXPPPPXGGXGGG 886
PP G PPPP GG GG
Sbjct: 347 PPGGCPPPPPPPPPGGFKGG 366
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 725 GPPPPXXKXKKXPPXKXGGXPPP 793
GPPP PP GG PPP
Sbjct: 1591 GPPPRLGMPPPGPPPPNGGPPPP 1613
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 725 GPPPPXXKXKKXPPXKXGGXPPP 793
G PPP K PP G PPP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPP 257
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 725 GPPPPXXKXKKXPPXKXGGXPPP 793
G PPP K PP G PPP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPP 278
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 725 GPPPPXXKXKKXPPXKXGGXPPP 793
G PPP K PP G PPP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPP 263
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 697 PXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPP 575
P G GP G PP G+ PP GG PPP
Sbjct: 164 PRGPPGGMGGPPGHGGMGG-PPGHGGQGGPPGHGGMGGPPP 203
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -1
Query: 697 PXXXXGPXXGPXXKXFFXGVPPXFWGKQXPPXXGGEXXPPP 575
P G GP G PP G+ PP GG PPP
Sbjct: 444 PRGPPGGMGGPPGHGGMGG-PPGHGGQGGPPGHGGMGGPPP 483
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,660
Number of Sequences: 27780
Number of extensions: 190923
Number of successful extensions: 1080
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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