Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P06
         (1216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0945 + 33217310-33217427,33218820-33219433                       31   1.4  
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    30   3.2  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    29   7.4  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    29   7.4  
01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,925...    29   7.4  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   9.8  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   9.8  
03_05_0576 + 25765137-25766420                                         29   9.8  

>01_06_0945 + 33217310-33217427,33218820-33219433
          Length = 243

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 374 ARVRHPGARAXGSQPPAXRAGRGXGSTPHXSPXGPXXXLAYLPGRRGH 517
           AR   PG    G +PP   +     +  H SP  P   L  LPGRRGH
Sbjct: 54  ARSSSPGTPPRGRRPPP--SNLRPAAAQHRSPASPR--LPTLPGRRGH 97


>04_04_0965 -
           29762388-29762564,29764272-29766361,29766567-29767170,
           29768395-29768637,29768704-29770203
          Length = 1537

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 790 GXCXPPEXRGGXGXAGSGXRRGXLGXGGXAXP 695
           G C PPE  GG    G G R      GG   P
Sbjct: 71  GVCLPPETLGGVSCGGGGERTLVFASGGVCVP 102


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/64 (25%), Positives = 19/64 (29%)
 Frame = +3

Query: 696 GHAXPPXPSXPRRXPDPAXPXPPRXSGGXHXPRAXAXGPLXXXKXRAGXXXXTXPXAXHT 875
           G   PP P  P   P P  P  PR  G     +      +   + R      T P     
Sbjct: 90  GRGRPPKPRDPNAPPPPPKPSSPRPRGRPPKSKDPISDAIPKSRGRPPKKAKTAPAPPPA 149

Query: 876 XGPG 887
            G G
Sbjct: 150 AGDG 153


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 257 GSWXXXGFFLXXXFXFFFFXXFF 189
           G W    FF    F FFFF  FF
Sbjct: 80  GQWEGYAFFFFFFFFFFFFFFFF 102


>01_01_1162 -
           9253034-9254229,9254387-9254456,9254473-9254567,
           9255344-9255487,9255514-9255622
          Length = 537

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 702 AXPPXPSXPRRXPDPAXPXPPRXSGGXHXPRAXAXGP 812
           A  P P+ P R P P  P PPR  GG    R     P
Sbjct: 194 AAAPFPA-PTRRPPPPPPPPPRCPGGSAADRHMTQPP 229


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 704 PXPSPXLXPAXSXPXXPPPAPXL 772
           P P P + P  S P  PPP P L
Sbjct: 605 PPPPPPILPNRSVPPPPPPPPPL 627


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +2

Query: 305 PAAXXAXRPXGAPPXAXXXXXPXARVRHPGARAXGSQPPAXRAGRGXGSTPHX-SPXGP 478
           PA   +    G+ P         A  R PG    G  PP   AGRG G  P    P GP
Sbjct: 336 PAPSPSAAGAGSGPPPPPPPAAPAAPRPPGP-GPGPPPPPGAAGRGGGGPPPPALPGGP 393


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 704 PXPSPXLXPAXSXPXXPPPAP 766
           P PSP   P  S P  PPP+P
Sbjct: 73  PSPSPSPPPQPSSPPPPPPSP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,723
Number of Sequences: 37544
Number of extensions: 235744
Number of successful extensions: 2313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)