Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P06
(1216 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.94
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 30 2.9
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 30 2.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 2.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 2.9
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 30 3.8
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 30 3.8
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 6.6
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 29 6.6
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 8.8
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.94
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 669 SPXXGXRXXGHAXPPXPSXPRRXPDP--AXPXPPRXSGGXHXP 791
SP R G PP P P P P A P PP SG H P
Sbjct: 59 SPPPAPRPSGQ--PPGPQGPSDLPGPSGAPPGPPHPSGPPHRP 99
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 695 GXRPXPSPX-LXPAXSXPXXPPPAP 766
G RP PSP L PA P PPP P
Sbjct: 480 GARPPPSPPALPPALPNPNEPPPPP 504
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +2
Query: 326 RPXGAPPXAXXXXXPXARVRHPGARAXGSQPPAXRAG--RGXGSTPHXSPXGPXXXLAYL 499
RP G A P R HP A + PPA + G G TP P P L
Sbjct: 6 RPHGTHEPAVGVTRPFVRQSHPEIAAWPAPPPAHQLGCLSGNVRTPVGGPAPPSPVLRRA 65
Query: 500 P 502
P
Sbjct: 66 P 66
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 672 PXXGXRXXGHAXPPXPSXPRRXPDPAXPXPPRXSGGXHXPRAXAXGPL 815
P R G+ PP P P + P P PP G + P+ GP+
Sbjct: 725 PPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPH---GQYQPQQQQGGPM 769
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 672 PXXGXRXXGHAXPPXPSXPRRXPDPAXPXPPRXSGGXHXPRAXAXGPL 815
P R G+ PP P P + P P PP G + P+ GP+
Sbjct: 725 PPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPH---GQYQPQQQQGGPM 769
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 696 GHAXPPXPSXPRRXPDPAXP-XPPRXSG--GXHXP 791
G PP P PR P P P PP SG G H P
Sbjct: 246 GEMGPPGPPGPRGEPGPPGPFGPPGDSGEPGGHCP 280
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = +3
Query: 696 GHAXPPXPSXPRRXPDPAXP-XPPRXSG--GXHXP 791
G PP P PR P P P PP SG G H P
Sbjct: 246 GEMGPPGPPGPRGEPGPPGPFGPPGDSGEPGGHCP 280
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.1 bits (62), Expect = 6.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 793 RGXCXPPEXRGGXGXAGSGXRRGXLGXGGXAXP 695
+G PP GG G G G R G G G A P
Sbjct: 171 KGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGP 203
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 29.1 bits (62), Expect = 6.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 704 PXPSPXLXPAXSXPXXPPPAPXL 772
P PSP L P P PPP P +
Sbjct: 316 PCPSPPLLPPVCPPAPPPPPPPI 338
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -1
Query: 853 VXXWXPARXXXXQSGPXAXARGXCXPPEXRGGXGXAGSGXRRGXLGXGG 707
V W P GP + G P E G G G G G GG
Sbjct: 17 VGQWGPGFGGPGFGGPGSGGPGPRGPGEWNNGGGRGGFGGNNGWNNGGG 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,105
Number of Sequences: 27780
Number of extensions: 158522
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3349461018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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