Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P05
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.72
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 3.8
12_01_0816 + 7502669-7503145 29 5.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 5.1
03_05_0583 - 25838016-25838684 29 5.1
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.7
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 29 6.7
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 8.8
01_01_1008 - 7987936-7988628,7988923-7989102 28 8.8
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 31.9 bits (69), Expect = 0.72
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +3
Query: 540 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSRPC--RLPDTCPPFSLR 707
L PP Q+WR+ PTG + +FP G LP A +P R P T P F R
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPAT-PLFPSR 71
Query: 708 EAWRFLIAHAVGISVRCRSFAP 773
A + + + + +F P
Sbjct: 72 VAEGLFGLNGIEVGIEGDNFTP 93
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = -2
Query: 863 SCLTGLTQDD--SYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKA-PRFPK 702
+C T T S R R+ + R R S W+ RP+ T S+S + PRFP+
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFPR 96
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 821 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 690
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 765 FAPSWAVCTNPPFSPTAAPYPVTIVLSQP 851
F P AV PP P AAP PV + + P
Sbjct: 67 FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95
>03_05_0583 - 25838016-25838684
Length = 222
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 630 PGKLPRALSCSRPCRLPDTCPPFSLREAWRFLIAHAV 740
PG+L CS PCR TC P E ++ L V
Sbjct: 161 PGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETV 197
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 154 HCILVVVCPNSSMYLIMSGSN*PSAKGRSAAAVP 53
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 721 KRHASRREKGGQVSGKRQGREQESARGSFPGGNAW 617
K H RR +GG + E+E+ R S GG W
Sbjct: 9 KHHHHRRRRGGGGEDGGEEEEEETGRLSLRGGGFW 43
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 645 RALSCSRPCRLPDTCPPFSLREAWRFLIAHA 737
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 724 RKRHASRREKGGQVSGKRQGREQESARGSFPG 629
R R RR GG+V+G+ R + RG++ G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEG 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,343,972
Number of Sequences: 37544
Number of extensions: 594544
Number of successful extensions: 1970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1968
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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