Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P04
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    95   9e-21
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   4.8  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 95.5 bits (227), Expect = 9e-21
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
 Frame = +2

Query: 263 LDKNFEEFDPQKEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE 442
           L K  +E D   E +LR NP RFV+FPI+Y +IWQ YKKAEASFWT EE+DLSKDL DW+
Sbjct: 57  LGKKEDELD---EVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD 113

Query: 443 T-LKDSERHFIKHVLGF 490
             L   ER+FI  VL +
Sbjct: 114 NKLNADERYFISTVLAY 130



 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 56/116 (48%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = +3

Query: 504 DGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLAY-RYLHQRSEGER-FSV* 677
           DGIVNENL+ERFS EVQ+ EARC YGFQI +EN+HSE YSL    Y+ +  E +R F   
Sbjct: 135 DGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAI 194

Query: 678 CG*DSSLCKEESRLGSTVDCKQDCNIW*KDCCLCSCKRIFFSGSFASIFWLKXGAL 845
               S   K +  L    D  +D     +     + + IFFSGSFASIFWLK   L
Sbjct: 195 LTMGSIKAKAKWALRWIND--EDSTYAIRLVAFAAVEGIFFSGSFASIFWLKKRGL 248


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 206 PMKNSVLATKN-DNLTEEMDLDKNFEEFDPQKEPLL 310
           P  N +L T + D L   +D  K  +  DP+++PLL
Sbjct: 156 PKDNELLLTGSVDGLVSLLDTTKEEDSTDPEEDPLL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,630,710
Number of Sequences: 5004
Number of extensions: 77770
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)