Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_P04
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1045 - 8241862-8242881 92 6e-19
06_01_0189 + 1470006-1470989 91 1e-18
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 31 1.2
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 29 5.0
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 29 5.0
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 29 6.6
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 29 6.6
>06_01_1045 - 8241862-8242881
Length = 339
Score = 91.9 bits (218), Expect = 6e-19
Identities = 41/66 (62%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +2
Query: 296 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 472
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHFI
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFI 73
Query: 473 KHVLGF 490
HVL F
Sbjct: 74 SHVLAF 79
Score = 79.0 bits (186), Expect = 5e-15
Identities = 48/115 (41%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Frame = +3
Query: 504 DGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLAYR-YLHQRSEGERFSV*C 680
DGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSL Y+ +E +R
Sbjct: 84 DGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAI 143
Query: 681 G*DSSLCKEESRLGSTVDCKQDCNIW*KDCCLCSCKRIFFSGSFASIFWLKXGAL 845
++ ++ +D + + + IFFSGSF +IFWLK L
Sbjct: 144 DTVPAVRRKADWAMRWIDGGE--RFAERLVAFACVEGIFFSGSFCAIFWLKKRGL 196
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 628 LIDTYIRDPKERDFLFNAVETLPCVKKKADWALQWIASRTATFGERIVAFAAVKE-SFSQ 804
L++TYIRD E+D LF A++T+P V++KADWA++WI F ER+VAFA V+ FS
Sbjct: 125 LLETYIRDGAEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSG 183
Query: 805 AVLLPSSGSKXGPYAGTXFSNXLF-QG*GLH 894
+ K G G FSN L + GLH
Sbjct: 184 SFCAIFWLKKRGLMPGLTFSNELISRDEGLH 214
>06_01_0189 + 1470006-1470989
Length = 327
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/66 (60%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +2
Query: 296 KEPLLRENPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDLSDWE-TLKDSERHFI 472
+EPLL E+ RF +FPI+YP IW+ YKKA ASFWT EEVDLS D W+ L ERHF+
Sbjct: 2 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 61
Query: 473 KHVLGF 490
HVL F
Sbjct: 62 SHVLAF 67
Score = 77.8 bits (183), Expect = 1e-14
Identities = 48/115 (41%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Frame = +3
Query: 504 DGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLAYR-YLHQRSEGERFSV*C 680
DGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSL Y+ E +R
Sbjct: 72 DGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAI 131
Query: 681 G*DSSLCKEESRLGSTVDCKQDCNIW*KDCCLCSCKRIFFSGSFASIFWLKXGAL 845
++ ++ +D + + + IFFSGSF +IFWLK L
Sbjct: 132 DTVPAVRRKADWAMRWIDGGE--RFAERLVAFACVEGIFFSGSFCAIFWLKKRGL 184
Score = 70.1 bits (164), Expect = 2e-12
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 628 LIDTYIRDPKERDFLFNAVETLPCVKKKADWALQWIASRTATFGERIVAFAAVKE-SFSQ 804
L++TYIRD E+D LF A++T+P V++KADWA++WI F ER+VAFA V+ FS
Sbjct: 113 LLETYIRDDVEKDRLFRAIDTVPAVRRKADWAMRWI-DGGERFAERLVAFACVEGIFFSG 171
Query: 805 AVLLPSSGSKXGPYAGTXFSNXLF-QG*GLH 894
+ K G G FSN L + GLH
Sbjct: 172 SFCAIFWLKKRGLMPGLTFSNELISRDEGLH 202
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 158 NLHSGINGENRVQTKSPMKNSVLATKNDNLTEEM-DLDKNFEEFDPQKEPLLRENPRRFV 334
++H R+ + P +N+V+ T++D+L E + D + + + E RENP
Sbjct: 45 DIHHTDPSVERLPVQLPFENNVIFTEDDDLEEVIEDPNSSTTKLTAWLEAN-RENPSARQ 103
Query: 335 IFPIQYPDIWQMYKKAEASFW 397
+ I+YP+ W + + +W
Sbjct: 104 LTYIEYPEHWTWHN--QGKYW 122
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 258 ISSVKLSFFVANTLFFMGDFVCTRFSPLIP 169
IS+ LS VA +L+ + F+CTR+ L P
Sbjct: 342 ISTTMLSCIVARSLYGLVSFLCTRYRGLTP 371
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = -1
Query: 376 LVHLPYIGVLNREDDKAPRVLPQQRFLLWVEL-----FEIFIEVHFLSQIVIFRSQYTI 215
L+HL Y+G+++ K PR + +FL ++L E+ EV L+Q+V R+ + I
Sbjct: 769 LLHLRYLGLVDTYITKLPREVRYLKFLQTLDLRGSRIKELPEEVGLLTQLVCLRADWEI 827
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +2
Query: 149 DKENLHSGINGENRVQTKSPMKNSVLATKNDNLTEEMDLDK----NFEEFDPQKE 301
D N S GE S KN +K + EEMDLDK EE DP+ E
Sbjct: 448 DMTNAVSEDGGEKEKNDTSAKKNKKKKSKAEADGEEMDLDKPAKVAAEETDPENE 502
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -1
Query: 850 RHKAPXL-SQKMEAKLPEKKILLQLQRQQSFHQMLQSCLQSTVEPNLLSSLHREE----- 689
RH A S ++ P+ K L+ L Q +FH ST P L S+H +
Sbjct: 1504 RHFASAFASARLALPSPQDKRLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHARDVHANN 1563
Query: 688 SQPH*TENLSPSDL*CRYL 632
+ P E SP + CR L
Sbjct: 1564 TNPIIEEPASPREEECREL 1582
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,744,295
Number of Sequences: 37544
Number of extensions: 474389
Number of successful extensions: 1276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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