Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_P04
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.53 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   5.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   5.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 338 FPIQYPDIWQMYKKAEASFWTVEEVDLSKD 427
           FP Q P  W++ K AE + + V E DLS D
Sbjct: 217 FPYQPPFAWKILKAAEEAGFGVSE-DLSGD 245


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 628 LIDTYIRDPKERDFL 672
           +ID ++R PKE+ FL
Sbjct: 56  MIDCFVRIPKEQGFL 70


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 628 LIDTYIRDPKERDFL 672
           +ID ++R PKE+ FL
Sbjct: 56  MIDCFVRIPKEQGFL 70


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 389 SFWTVEEVDLSKDL 430
           +FWT  +VDLS+ L
Sbjct: 450 TFWTKSDVDLSRGL 463


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 428 LSDWETLKDSERHFIKHVLGFLCG 499
           L+DW +L  S    +   LGFL G
Sbjct: 430 LNDWYSLASSWPALVPLALGFLAG 453


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 329 SAAGSPAAEVPFVGRTLRN 273
           +A G P  +VP V R LRN
Sbjct: 66  TADGHPVNDVPGVRRVLRN 84


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 329 SAAGSPAAEVPFVGRTLRN 273
           +A G P  +VP V R LRN
Sbjct: 66  TADGHPVNDVPGVRRVLRN 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,685
Number of Sequences: 438
Number of extensions: 5136
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)